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philarevalo
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PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
GNU General Public License v3.0
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feat: allow import as a snakemake module
#39
Hocnonsense
opened
9 months ago
0
What if mugsy do not report all SNP?
#38
Hocnonsense
closed
9 months ago
0
Unexpected results using different genome sets
#37
444thLiao
opened
10 months ago
0
FileNotFoundError #36
#36
Balu-Anupoju-Vt
opened
11 months ago
0
Conda installation failed, indicating that the package is outdated
#35
Dx-wmc
closed
1 year ago
0
Mapping of positions in the output core gene sweep
#34
Xiaojun928
opened
1 year ago
0
Python 3 package rpy2 needs to be installed to use the R function
#33
joneson
closed
1 year ago
0
Merge pull request #31 from philarevalo/master
#32
philarevalo
closed
2 years ago
0
Add in container functionality
#31
philarevalo
closed
2 years ago
0
Add container
#30
philarevalo
closed
2 years ago
0
Flexible gene sweep test output
#29
philarevalo
opened
2 years ago
0
Test expected output for PopCOGenT
#28
philarevalo
closed
2 years ago
0
Error running phybreak4.retrieveLikelihood.py
#27
bio-unach
opened
2 years ago
0
Is it acceptable to work with MAGs?
#26
sarpiens
opened
2 years ago
2
Core Gene Sweeps phybreak_parameters.txt clarification
#25
rotheconrad
opened
2 years ago
2
Issue with R on phybreak4
#24
Elcquid
closed
1 year ago
1
conda installation issue
#23
ntromas
opened
2 years ago
0
fali to parsing sequences
#22
Xiaojun928
opened
3 years ago
2
flexible genome sweep error
#21
maguileraf
closed
2 years ago
1
Error of running phybreak1.generate_maf.py
#20
TarsLi
opened
3 years ago
1
Long run time for phyml script - phybreak3.MSAsubset_runPhyML.py
#19
npbhavya
opened
3 years ago
0
Plotting
#18
maguileraf
closed
2 years ago
0
PopCOGenT run error
#17
threehourse
opened
3 years ago
0
Plot the .graphml file
#16
lyy005
opened
4 years ago
3
FileNotFoundError
#15
lyy005
closed
4 years ago
2
Python 3 pachage rpy2 needs to be installed to use the R function.
#14
rsiani
opened
4 years ago
7
PopCOGenT
#13
malihaaziz
opened
4 years ago
9
flexible_genome_sweeps error
#12
rsiani
closed
4 years ago
0
PopCOGenT, cannot find Bio
#11
joneson
closed
4 years ago
15
Error running phybreak2.maf_to_fasta.py
#10
asierzaragoza
closed
4 years ago
2
PopCOGenT run error
#9
Diamonds95
opened
4 years ago
2
Core gene sweeps module
#8
thr44pw00d
opened
4 years ago
9
Fails when two input genomes are exactly identical
#7
philarevalo
closed
4 years ago
0
License and contributing
#6
vinisalazar
closed
4 years ago
2
conda env create error: joblib=0.9.4 package not found
#5
k6logc
closed
4 years ago
9
Failed to run flexible_genome_sweeps
#4
anyone1985
opened
4 years ago
3
failed job run_mmseqs
#3
jiyunli
opened
4 years ago
5
create a release?
#2
nick-youngblut
opened
4 years ago
11
Run long time in runPhyML.py
#1
jiyunli
closed
4 years ago
20