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plinder-org
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plinder
Protein Ligand INteraction Dataset and Evaluation Resource
https://plinder.sh
Apache License 2.0
140
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Add split to query_index
#63
Ninjani
closed
3 days ago
1
Refactoring eval for better usability
#62
Ninjani
closed
4 days ago
1
System ID `8q5i__1__1.GA__1.ZB` missing DNA complex
#61
danielzeng-gt
opened
1 week ago
1
Enriching PLIP Interaction info
#60
leelasd
closed
1 week ago
2
Make Robust Loader
#59
yusuf1759
opened
2 weeks ago
0
Update MLSB docs
#58
yusuf1759
closed
1 week ago
0
Fix linked scores
#57
tjduigna
closed
2 weeks ago
1
Consolidate update MLSB notebook and fix docs bug
#56
OleinikovasV
closed
2 weeks ago
1
Export dataloader functionalities in `plinder.core.loader`
#55
padix-key
closed
2 weeks ago
1
Update mlsb notebook
#54
yusuf1759
closed
2 weeks ago
1
Cleanup again
#53
OleinikovasV
closed
5 days ago
1
Add examples to docs
#52
padix-key
closed
2 weeks ago
1
Cleanup dependencies
#51
yusuf1759
closed
3 weeks ago
1
Minor update to docs.
#50
yusuf1759
closed
3 weeks ago
0
I don't really want to reopen this, but it's still not clear what you used for training and testing. In plinder-pl50.parquet you have this many systems for train/val/test:
#49
patrickbryant1
closed
3 weeks ago
2
Fix cross references
#48
padix-key
closed
3 weeks ago
0
Add description of apo/pred links to dataset tutorial
#47
yusuf1759
closed
3 weeks ago
0
Fix PyPI publish again
#46
tjduigna
closed
3 weeks ago
0
Fix PyPI publish
#45
tjduigna
closed
3 weeks ago
1
Cache index table to decrease docs building times
#44
padix-key
closed
3 weeks ago
0
Publish `plinder` on PyPI for easier installation
#43
padix-key
closed
3 weeks ago
1
Add a sample notebook to load training and validation data
#42
yusuf1759
closed
2 weeks ago
1
Update website dataset docs
#41
OleinikovasV
closed
3 weeks ago
2
Minor readme fix
#40
yusuf1759
closed
3 weeks ago
0
Plinder system performance improvements
#39
tjduigna
closed
3 weeks ago
3
Add unit testing to eval code
#38
yusuf1759
closed
3 weeks ago
1
Move information from README to documentation
#37
padix-key
closed
3 weeks ago
5
Question on Docking Multi-Ligands and DiffDock Dataset Splits
#36
danielzeng-gt
closed
3 weeks ago
3
Add API reference
#35
padix-key
closed
3 weeks ago
1
Update README.md
#34
yusuf1759
closed
1 month ago
0
Fix list types in plindex
#33
Ninjani
closed
4 weeks ago
0
Update pyproject.toml
#32
tjduigna
closed
1 month ago
0
"six" is missing from the installation requirements
#31
PatWalters
closed
1 month ago
1
Add Python API tutorial notebook
#30
yusuf1759
closed
4 weeks ago
16
Prettify annotation table
#29
padix-key
closed
4 weeks ago
0
Update splitting
#28
tjduigna
closed
3 weeks ago
1
V2 Split for Plinder
#27
danielzeng-gt
closed
1 month ago
1
Fix pred linked structure generation
#26
tjduigna
closed
4 weeks ago
1
Revamp documentation
#25
padix-key
closed
1 month ago
1
Make annotations description generation automatable
#24
yusuf1759
closed
1 month ago
4
Cleanup branch
#23
OleinikovasV
closed
2 weeks ago
2
README UPDATE
#22
yusuf1759
closed
1 month ago
0
Getting Plinder-PL50 subdataset
#21
VectorShi
closed
1 month ago
4
Getting train/val/test data
#20
patrickbryant1
closed
1 month ago
12
Adding Arpeggio
#19
Ninjani
opened
1 month ago
0
fix covalent detection, comment out unused code
#18
OleinikovasV
closed
1 month ago
1
feat: change system and interaction definition
#17
Ninjani
closed
1 month ago
1
Add functionality to deleak specific test set
#16
yusuf1759
opened
1 month ago
2
Plinder Data Loader
#15
tjduigna
closed
1 month ago
1
Annotation updates
#14
Ninjani
closed
1 month ago
5
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