pnnl-predictive-phenomics eflux issues

pnnl-predictive-phenomics / eflux

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Zero fluxes in Eflux

#29 djinnome opened 2 months ago
1
Initial pass at eflux3 method, adding necessary util files

#28 mcnaughtonadm opened 2 months ago
2
Add all of the previous iterations of E-Flux

#27 mcnaughtonadm opened 2 months ago
0
Update all documentation and examples

#26 mcnaughtonadm opened 2 months ago
0
Create `paper` directory for JOSS publication

#25 mcnaughtonadm opened 2 months ago
0
Create a 'main' function

#24 mcnaughtonadm opened 2 months ago
0
Rename codebase to Eflux3

#23 mcnaughtonadm opened 2 months ago
1
Run Eflux to obtain condition-specific fluxes based on proteomics

#22 djinnome closed 4 months ago
1
Update python-app.yml (#20)

#21 mcnaughtonadm closed 5 months ago
0
Update python-app.yml

#20 mcnaughtonadm closed 5 months ago
0
Fix Github Actions

#19 mcnaughtonadm closed 5 months ago
0
Adding mypy and running type checking. Fixing pyproject.toml.

#18 mcnaughtonadm closed 5 months ago
2
Remove ill-conditioned metabolites from the Biomass reaction

#17 djinnome closed 6 months ago
0
Rename `get_normalized_condition` function in eflux2 to a more descriptive name

#16 ShantMahserejian opened 6 months ago
0
7 use enzyme activity data to modify the bounds for non reference conditions

#15 ShantMahserejian closed 6 months ago
0
Editing documentation

#14 mcnaughtonadm closed 6 months ago
0
7 use enzyme activity data to modify the bounds for non reference conditions

#13 mcnaughtonadm closed 6 months ago
0
7 use enzyme activity data to modify the bounds for non reference conditions

#12 ShantMahserejian closed 6 months ago
0
Ci cd integration

#11 ShantMahserejian closed 6 months ago
0
7 use enzyme activity data to modify the bounds for non reference conditions

#10 ShantMahserejian closed 6 months ago
0
Create python-app.yml

#9 mcnaughtonadm closed 6 months ago
2
Update README.md

#8 djinnome closed 6 months ago
0
Use enzyme activity data to modify the bounds for non-reference conditions

#7 ShantMahserejian closed 6 months ago
0
run E-flux with slack variables to compute the condition-specific flux distribution.

#6 djinnome closed 6 months ago
0
Add github action for CI

#5 djinnome closed 6 months ago
1
1 outline of approach

#4 ShantMahserejian closed 6 months ago
0
2 create utils file

#3 ShantMahserejian closed 6 months ago
0
Create utils file

#2 ShantMahserejian closed 6 months ago
0
Outline of approach

#1 djinnome opened 6 months ago
0