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pombase
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allele_qc
Quality control for PomBase alleles
MIT License
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Fix "SyntaxWarning: invalid escape sequence '\d'"
#116
kimrutherford
closed
3 weeks ago
1
Canto issue 2807 ctd abbrevs manu
#115
manulera
closed
6 months ago
2
Attempt to add support for CTD abbreviations
#114
kimrutherford
closed
6 months ago
9
Add double quotes around detail in error messages
#113
kimrutherford
closed
10 months ago
1
fix 1st line of modifications not being read
#112
manulera
closed
10 months ago
1
Change get_data.sh to use latest contig files
#111
kimrutherford
closed
11 months ago
0
Failed job
#110
manulera
closed
12 months ago
5
Improve docs
#109
manulera
closed
1 year ago
0
Use gtf file from nightly load
#108
manulera
opened
1 year ago
2
Use transcript ids for standard nomenclature descriptions of proteins
#107
manulera
opened
1 year ago
0
Update pyproject.toml - requests version
#106
kimrutherford
closed
1 year ago
0
Sgd allele auto fix + transvar support
#105
manulera
closed
1 year ago
0
Internal Server Error for /check_modification
#104
kimrutherford
closed
1 year ago
2
Remove hacky fix for sgd in allele_transvar
#103
manulera
closed
1 year ago
0
Cleaner solution for multi_aa in allele_auto_fix
#102
manulera
opened
1 year ago
0
Odd pattern_error for "N24N"
#101
kimrutherford
closed
1 year ago
8
Samtools from apt
#100
manulera
closed
1 year ago
0
Install samtools/htslib from APT
#99
kimrutherford
closed
1 year ago
1
Issue 96
#98
manulera
closed
1 year ago
0
First steps towards SGD support
#97
manulera
closed
1 year ago
0
CTD support
#96
manulera
closed
1 year ago
2
Fixes for pipeline
#95
manulera
closed
1 year ago
0
Include legacy alleles in the fixes
#94
manulera
opened
1 year ago
0
Add allele name to api calls
#93
manulera
closed
1 year ago
1
Transvar 2
#92
manulera
closed
1 year ago
0
Handle the special case of SPAC1486.05
#91
manulera
closed
1 year ago
1
Improve handle_systematic_id_for_qc
#90
manulera
closed
1 year ago
0
Transvar for the modifications as well
#89
manulera
closed
1 year ago
1
Transvar 2
#88
manulera
closed
1 year ago
0
fix residue_at_position for DNA
#87
manulera
closed
1 year ago
0
improve format_negatives and num in grammar.py
#86
manulera
closed
1 year ago
1
Transvar integration in API
#85
manulera
closed
1 year ago
0
Issue 78
#84
manulera
closed
1 year ago
0
Fix loader on PHAF files not working as expected
#83
manulera
opened
1 year ago
1
Remove coordinate_indexes from grammar rules
#82
manulera
closed
1 year ago
0
Update Canto interface and documentation examples
#81
manulera
closed
1 year ago
1
Update to new nomenclature in PHAF files
#80
manulera
closed
1 year ago
1
Update to new nomenclature
#79
manulera
closed
1 year ago
20
Pipeline to update from old description to new
#78
manulera
closed
1 year ago
0
Migrate to new nomenclature
#77
manulera
closed
1 year ago
1
Import new batch of manual fixes
#76
manulera
closed
1 year ago
27
Issue 24
#75
manulera
closed
1 year ago
0
Issue 73
#74
manulera
closed
1 year ago
0
Relax restriction of amino acid substitution sides having to match
#73
manulera
closed
1 year ago
1
Use transvar to convert protein modifications in our format - pipeline
#72
manulera
closed
1 year ago
1
Use transvar to convert protein modifications in our format - API endpoint
#71
manulera
closed
1 year ago
0
Check that MOD codes make sense with the indicated aminoacid
#70
manulera
closed
1 year ago
1
Better errors when aminoacids are sent as nucleotides and viceversa
#69
manulera
closed
1 year ago
0
Add entry point to fix with DNA alleles with old genome coordinates
#68
manulera
closed
1 year ago
0
PMID:1 allele in canto allele dump
#67
manulera
closed
1 year ago
3
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