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pombase
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canto
The PomBase community curation tool
https://curation.pombase.org
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gene expression curation
#1491
mah11
closed
3 years ago
78
Create a curation stats page
#1180
kimrutherford
closed
7 years ago
72
Capturing expression in Canto (with implications for website allele /genotype)
#2544
ValWood
closed
2 months ago
70
better support for diploid genotypes
#976
mah11
closed
4 years ago
58
Recording variant status of genotypes (natural or engineered)
#2346
ValWood
opened
3 years ago
55
FlyBase genetic interaction / genotype-genotype interactions
#1915
ValWood
closed
4 years ago
55
genetic interactions (Pombase)
#2301
ValWood
closed
2 years ago
53
workflow improvement in genotype creation/management
#1078
ValWood
closed
8 years ago
51
disambiguating allele descriptions
#350
pombase-admin
closed
8 years ago
50
Annotation extensions
#181
pombase-admin
closed
8 years ago
47
Next steps for GAF export
#2255
ValWood
closed
3 years ago
45
Load automatic fixes from allele_qc
#2689
manulera
closed
1 year ago
44
subsets: taxon restrictions and restricting subsets of ontologies from visibility in the curation tool
#28
pombase-admin
closed
6 years ago
43
Handle extension ranges like: "SO:0000234|SO:0000655|TranscriptID"
#1007
kimrutherford
closed
8 years ago
42
Capture figure number as a separate data field
#2320
jseager7
closed
3 years ago
40
Allow the use of ontology subsets in canto to restrict terms "not for direct annotation"
#1411
ValWood
closed
5 years ago
39
Genotype comment and allele comments
#2511
ValWood
closed
2 years ago
37
Changes to PHI-Canto metagenotype extension workflow
#2345
ValWood
closed
3 years ago
37
Allow multiple alleles/genotypes annotations in one go
#1830
vmt25
closed
3 years ago
37
Brenda Tissue Ontology terms aren't suggesting correctly
#2183
jseager7
closed
3 years ago
36
Data needed for community curation paper and grant
#1671
Antonialock
closed
5 years ago
36
phenotype Evidence codes
#98
pombase-admin
closed
8 years ago
36
Decide on a JSON format for FlyBase import
#1779
kimrutherford
closed
4 years ago
35
proposal to improve genotype management interface
#1381
ValWood
closed
6 years ago
33
Add ability to add 'missed' alleles without overwriting existing curation
#2248
gm119
closed
3 years ago
30
Use ORCID API / OAuth2 for logins
#1197
kimrutherford
opened
7 years ago
30
distinguish "disruption" type allele
#681
pombase-admin
closed
8 years ago
30
Use the allele_qc api to prevent addition of errors
#2688
manulera
closed
1 month ago
29
Update generic email templates to better support PHI-Canto
#2501
jseager7
closed
2 years ago
29
no options to curate GI
#2699
ValWood
closed
1 year ago
28
Make tooltips more responsive on mouse-over
#2397
ValWood
closed
3 years ago
28
PHI-base GO MF config file
#2182
ValWood
closed
4 years ago
28
Link to metagenotype details from metagenotype annotation rows
#2085
ValWood
closed
3 years ago
28
Add strain entry into the interface
#1610
barnabynorman
closed
5 years ago
28
annotation extension config files (question behavior)
#1148
ValWood
closed
7 years ago
28
Force into ontology interface if annotation duplication/term change uses an ontology term which is new for a session
#822
pombase-admin
closed
8 years ago
28
Allow transfer of interaction annotation to multiple features
#2244
kimrutherford
closed
3 years ago
27
Enable 'Not assayed' expression level on wild-type alleles
#2215
jseager7
closed
3 years ago
27
Notes associated with the publication to be visible in the admin pages
#2014
vmt25
closed
3 years ago
27
Make interaction editing dialog more intelligent
#1962
kimrutherford
closed
4 years ago
27
proposal to rename field in canto genotype management
#1321
ValWood
closed
4 years ago
27
Prevent changes to alleles that are existing alleles in Chado
#2758
kimrutherford
closed
2 months ago
26
Allow transfer of multiple phenotype lines from a genotype to another
#2250
vmt25
closed
2 years ago
26
distinguish between HTP and LTP annotation
#1755
ValWood
closed
5 years ago
26
change drill-down handling of output_of
#1307
mah11
closed
7 years ago
26
Migrate existing text extensions to the new structure
#1015
ValWood
closed
8 years ago
26
Implement cardinality constraints
#1008
kimrutherford
closed
8 years ago
26
proposed field name change "short name"
#2071
ValWood
opened
4 years ago
25
Think about improving UniProt XML parsing for gene names
#1543
kimrutherford
closed
1 year ago
25
don't we normally put "Description- Expression"
#1151
ValWood
closed
7 years ago
25
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