powellgenomicslab Nebulosa issues

powellgenomicslab / Nebulosa

R package to visualize gene expression data based on weighted kernel density estimation

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issues

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plot_density error: empty raster

#29 daddabi opened 2 months ago
0
Problems trying to generate a kernel density plot with more than 2 genes

#28 evaesquinas opened 3 months ago
0
Can you make it compatible to ggplot2v3.5?

#27 PrashINRA opened 4 months ago
2
Plot density issue for >1 gene and the projection output

#26 ganpha opened 4 months ago
0
cannot coerce type 'environment' to vector of type 'character'

#25 Noralii opened 4 months ago
1
Plot density issue

#24 apal6 opened 5 months ago
2
Update plotting.R

#23 beigelk closed 7 months ago
0
plot_density not working

#22 ftencaten opened 7 months ago
15
Prepare for upcoming Seurat v5 release

#21 saketkc opened 1 year ago
0
Make function density_plot to work smoothly with genes that have only zero read counts

#20 aghr opened 1 year ago
0
Nebulosa with metadata

#19 cgraham13 opened 1 year ago
0
Can Nebulosa be used from seurat object normalized via NormalizeData() instead of SCTransform()?

#18 levinhein opened 2 years ago
1
Why does the highest expression plotted with most negative density? Disagreement between FeaturePlot vs plot_density

#17 denvercal1234GitHub opened 2 years ago
7
plot_density can't work

#16 lavon79 opened 2 years ago
0
Add additional viridis pal support

#15 samuel-marsh opened 3 years ago
0
Nebulosa with Module Scores?

#14 michaelcvermeulen opened 3 years ago
0
Nebulosa for multimodal data

#13 ghost opened 3 years ago
0
A few of advices for this package

#12 honghh2018 opened 3 years ago
1
How to get the feature data matrix from plot_density plots

#11 Xiangruili-seed opened 3 years ago
0
Replace Seurat imports with SeuratObject

#10 mojaveazure closed 3 years ago
1
spatstat exports issue

#9 ttriche opened 3 years ago
3
Python implementation

#8 Hrovatin opened 3 years ago
0
What is the optimal threshold value of joint density?

#7 yuGithuuub opened 3 years ago
3
Refer to the correct function from ks package

#6 gokceneraslan closed 3 years ago
1
Introduce split.by?

#5 kmshort opened 3 years ago
1
Layering Nebulosa Visualization with Clustering Results

#4 mhwadsworth91 opened 3 years ago
0
Does Nebulosa support the visualization of CITE-seq data?

#3 lxhuang7 closed 3 years ago
2
Install Nebulosa on R 3.6.3

#2 MelissaSaichi closed 4 years ago
1
Use Seurat accessors instead of slot

#1 mojaveazure closed 4 years ago
0