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pr4deepr
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GutAnalysisToolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
https://gut-analysis-toolbox.gitbook.io/docs/
BSD 3-Clause "New" or "Revised" License
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[TEST] ensuring batch analysis works
#21
pr4deepr
closed
5 months ago
6
Updated Dialog Prompts for Clarity
#20
mattyrowey
closed
5 months ago
6
Added Dialog Boxes and Grammar Corrections
#19
mattyrowey
closed
7 months ago
0
Updating User Dialogs
#18
mattyrowey
closed
7 months ago
2
Improve neuron subtype segmentation models
#17
pr4deepr
opened
10 months ago
0
Improved ganglia segmentation models (high priority)
#16
pr4deepr
opened
10 months ago
0
Import custom ROIs
#15
pr4deepr
closed
1 year ago
2
Cellpose integration
#14
pr4deepr
opened
1 year ago
0
collate results into one file
#13
pr4deepr
closed
1 year ago
1
[BUG] Spatial Analysis returns results neighbours incremented by 1
#12
pr4deepr
closed
1 year ago
1
cellpose model
#11
pr4deepr
opened
1 year ago
0
define ganglia using Hu only
#10
pr4deepr
closed
2 years ago
2
Detecting # of nuclei per ganglia
#9
haleydeselle
closed
2 years ago
8
Use rescale factor instead of pixel size
#8
pr4deepr
closed
2 years ago
2
model pixel size
#7
pr4deepr
closed
10 months ago
1
3D segmentation and annotations
#6
pr4deepr
opened
2 years ago
0
Add workflows for QuPath, napari and ilastik
#5
pr4deepr
opened
2 years ago
1
Improved neuron subtype model
#4
pr4deepr
closed
2 years ago
1
better logging for troubleshooting
#3
pr4deepr
closed
2 years ago
1
Image already open checkbox not working
#2
NargesMahdavian
closed
2 years ago
2
Merging new changes
#1
pr4deepr
closed
3 years ago
0