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primaryodors
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primarydock
PrimaryOdors.org molecular docker.
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Ramachandran plots.
#392
primaryodors
closed
7 months ago
0
Broken strand reconnection
#391
primaryodors
opened
7 months ago
2
Mechanism for activation of OR6A/B/P/Y receptors by aldehydes.
#390
primaryodors
closed
4 months ago
3
PO numbering scheme
#389
primaryodors
closed
7 months ago
2
Histidine protonation for OR51E2
#388
primaryodors
closed
7 months ago
3
Decrease amount of drift toward pocket center.
#387
primaryodors
closed
8 months ago
1
Ligand still pulling away from binding residues.
#386
primaryodors
closed
8 months ago
0
Pull ligand toward side chains with potential for stronger binding energy.
#385
primaryodors
closed
8 months ago
1
Phylogenetic tree.
#384
primaryodors
closed
8 months ago
0
Use dashes instead of spaces in sequence alignments.
#383
primaryodors
closed
8 months ago
0
Easier receptor additions.
#382
primaryodors
closed
8 months ago
1
OR4D11 data from Cho et al 2021.
#381
primaryodors
closed
8 months ago
0
Binding site for OR1B1.
#380
primaryodors
closed
8 months ago
2
Model PDBs do not match dock file contents.
#379
primaryodors
opened
8 months ago
0
Improved amino similarity algorithm.
#378
primaryodors
closed
8 months ago
2
Leave histidines uncharged and nonpolar unless H-bonded to an acid.
#377
primaryodors
closed
8 months ago
1
Water molecule in contact between Y5.58 and Y7.53.
#376
primaryodors
closed
8 months ago
2
MEASURE command for finding interatomic distances in Pepteditor.
#375
primaryodors
closed
8 months ago
0
Amino test is failing in stable branch.
#374
primaryodors
closed
8 months ago
3
TMR5-TMR6 extracellular end clash fix.
#373
primaryodors
closed
8 months ago
5
Ligands for OR2L13.
#372
primaryodors
closed
9 months ago
0
Enhancements to prediction download menu.
#371
primaryodors
closed
9 months ago
0
Dock info in viewer.
#370
primaryodors
closed
9 months ago
0
More output model fixes.
#369
primaryodors
closed
9 months ago
2
Performance and UI updates to ic_activate_or.
#368
primaryodors
closed
8 months ago
0
Clash limits.
#367
primaryodors
closed
9 months ago
1
Improved extracellular Y6.55~D/E45.51 contact for Hybrid6 activation.
#366
primaryodors
closed
9 months ago
3
Viewer: Option to toggle display of hydrogen atoms.
#365
primaryodors
closed
9 months ago
0
Light mode for 3D viewer.
#364
primaryodors
closed
9 months ago
0
Fix OUTPDB model to show same side chain configurations as dock file.
#363
primaryodors
closed
9 months ago
0
PDB scoring tool.
#362
primaryodors
closed
9 months ago
1
Fix OR9Q2 misalignment.
#361
primaryodors
closed
9 months ago
0
Possible mechanism for OR1A1 activation.
#360
primaryodors
opened
9 months ago
0
Flexion enhancements.
#359
primaryodors
closed
9 months ago
3
Add received folder to test system
#358
objarni
closed
9 months ago
2
Separate active and inactive dock config files.
#357
primaryodors
closed
9 months ago
1
Increase memory robustness.
#356
primaryodors
opened
9 months ago
4
Eucalyptol rings.
#355
primaryodors
closed
9 months ago
3
Incorrect rotatable bonds in complex cyclic compounds.
#354
primaryodors
closed
9 months ago
0
Changes from failed #351 PR.
#353
primaryodors
closed
9 months ago
3
Are the predictions just a random number generator?
#352
primaryodors
closed
8 months ago
4
Dynamic soft pocket.
#351
primaryodors
closed
9 months ago
2
Compliance.
#350
primaryodors
closed
10 months ago
0
Download links.
#349
primaryodors
closed
10 months ago
1
Skeletal formula tooltips on receptor page.
#348
primaryodors
closed
10 months ago
0
Possible mechanism for OR51E2 activation by ionones.
#347
primaryodors
opened
10 months ago
1
Dock OR51E2 directly into the cryo-EM model.
#346
primaryodors
closed
10 months ago
0
Functional grouping.
#345
primaryodors
closed
10 months ago
0
Cinnamaldehyde grouping is producing a strange result.
#344
primaryodors
closed
10 months ago
0
Group test arabinose fails in stable branch on some systems.
#343
primaryodors
closed
10 months ago
2
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