issues
search
psathyrella
/
partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
GNU General Public License v3.0
54
stars
34
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Singularity
#328
ashotmarg
closed
5 months ago
1
Issue with annotate
#327
ayeletperes
closed
5 months ago
5
Issues with COAR
#326
psathyrella
opened
5 months ago
1
Table of contents entries for command line scripts in auto generated sphinx docs are confusing
#325
psathyrella
closed
9 months ago
1
get-tree-metrics action error
#324
bio-liucheng
closed
9 months ago
4
Python version in docker: circle-plots.py
#323
ashotmarg
opened
10 months ago
25
Docker container scipy versioning
#322
samkleeman1
closed
6 months ago
4
KeyError when using --extra-annotation-columns
#321
m-vieira
closed
1 year ago
2
Dockerfile
#320
ashotmarg
opened
1 year ago
10
Updated macaque IMGT alignments
#319
scharch
closed
2 years ago
1
Mismatch between default and IMGT-aligned databases for macaques
#318
scharch
closed
2 years ago
0
AIRR output crashes trying to call get_droplet_id
#317
ressy
closed
2 years ago
5
A few fixes to the docs
#316
ressy
closed
2 years ago
2
Fully switch to quay.io
#315
psathyrella
closed
1 year ago
0
Add github actions
#314
jgallowa07
closed
1 year ago
1
simulating paired chains
#313
andreirajkovic
closed
3 years ago
13
disable germline inference
#312
krishnaroskin
closed
6 months ago
7
AIRR output with paired-loci
#311
elijgarcia
closed
3 years ago
17
Partis Killed - no other error message
#310
lindsly
closed
3 years ago
10
Assertion error when annotating
#309
NikaAb
closed
3 years ago
9
Fix super-long insertions/deletions in large, high-mutation families
#308
psathyrella
closed
3 years ago
3
Error in bcrham forward: sequences different length in Glomerator::NaiveHfrac
#307
nannabarnkob
closed
3 years ago
10
recommendation for non-stranded reads?
#306
alexpan82
closed
3 years ago
3
Simulating with user-defined parameters
#305
aeonsofmusic
closed
3 years ago
2
Converting partis partition yaml to AIRR tsv
#304
alexpan82
closed
4 years ago
7
Error using simulate function
#303
aeonsofmusic
closed
4 years ago
2
Crash running partis partition
#302
m-vieira
closed
4 years ago
4
Crash when running plot-partitions on output of partis partition run.
#301
wfs-lilly
closed
4 years ago
1
Crash when using get-tree-metrics on output of partis partition run.
#300
wfs-lilly
closed
4 years ago
5
partis partition crash
#299
wfs-lilly
closed
4 years ago
1
Chicken sequence annotation
#298
nannabarnkob
closed
4 years ago
10
get tree metrics for all partitions
#297
sravani9408
closed
4 years ago
2
utils.get_linearham_bounds comments, debug statements, small changes
#296
eharkins
closed
4 years ago
0
process linearham annotations
#295
eharkins
closed
5 years ago
0
linearham-info additions
#294
eharkins
closed
5 years ago
0
Add indelutils.restrict_to_compatible_indels
#293
eharkins
closed
5 years ago
0
treating VJ bounds shifting as a kwarg
#292
dunleavy005
closed
5 years ago
0
fixing igk/igl flexbounds/relpos handling
#291
dunleavy005
closed
5 years ago
0
flexbounds/relpos for igk/igl data
#290
dunleavy005
closed
5 years ago
0
flexbounds/relpox expanded for igk/igl data
#289
dunleavy005
closed
5 years ago
0
Add option to simulate with inferred clonal family size distribution
#288
psathyrella
closed
3 years ago
1
Naming of novel alleles with large numbers of SNPs?
#287
scharch
closed
5 years ago
2
Exceeded max number of tries for cmd
#286
NikaAb
closed
5 years ago
2
Choosing positions to test for allele finding
#285
scharch
closed
5 years ago
8
No partition in the output
#284
NikaAb
closed
5 years ago
2
--presto-output not working if novel alleles are inferred
#283
williamdlees
closed
5 years ago
9
Error with Partis when running Sumrep
#282
Pezhvuk
closed
5 years ago
3
germline inference from bad sequences
#281
scharch
closed
5 years ago
5
partition -> cluster label change
#280
dunleavy005
closed
5 years ago
0
Sequences marked as unproductive for unknown reasons
#279
nannabarnkob
closed
5 years ago
6
Next