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psathyrella
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partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
GNU General Public License v3.0
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test
#278
psathyrella
closed
5 years ago
0
Building bcrham failing with "undefined reference to YAML"
#277
scharch
closed
5 years ago
12
partis ignoring --extra-annotation-columns
#276
scharch
closed
5 years ago
3
slight flex update
#275
dunleavy005
closed
5 years ago
0
Suggested optimization/work-around for out of memory error?
#274
scharch
closed
5 years ago
5
--n-alleles-per-gene parameter not working
#273
scharch
closed
5 years ago
12
Confusing n procs status messages
#272
scharch
closed
5 years ago
2
correct/update version information
#271
scharch
closed
5 years ago
2
adding a linearham option assuming all clonal sequences
#270
dunleavy005
closed
5 years ago
0
better use of dict key iteration for linearham
#269
dunleavy005
closed
5 years ago
0
refined linearham logic to use gene support
#268
dunleavy005
closed
5 years ago
0
slight linearham fuzz fix
#267
dunleavy005
closed
5 years ago
0
widening linearham flexbounds in VD and DJ junctions
#266
dunleavy005
closed
5 years ago
0
hopefully, last linearham PR
#265
dunleavy005
closed
5 years ago
0
slight header fix
#264
dunleavy005
closed
5 years ago
0
more linearham improvements
#263
dunleavy005
closed
5 years ago
0
qr_gap_seq length not the same as qrbound length in v region indelfo
#262
darth-donut
closed
5 years ago
3
flexbounds/relpos restricted to non-zero probability gene matches
#261
dunleavy005
closed
5 years ago
0
--linearham changes round 500
#260
dunleavy005
closed
5 years ago
0
--linearham further changes
#259
dunleavy005
closed
5 years ago
0
partis partition --linearham
#258
dunleavy005
closed
5 years ago
0
more --linearham changes
#257
dunleavy005
closed
5 years ago
0
template not in codon_info error?
#256
scharch
closed
6 years ago
3
--linearham round 2
#255
dunleavy005
closed
6 years ago
0
--linearham fixing
#254
dunleavy005
closed
6 years ago
0
Run error: yaml is needed, manually installed, keeps failing
#253
mihuber
closed
6 years ago
5
python2.7 must be given explicitly; cannot find `gsl`, `gsldev`
#252
ozagordi
closed
6 years ago
7
Adding libxt6 for interactive R.
#251
matsen
closed
6 years ago
0
A much less ugly conda Dockerfile
#250
matsen
closed
6 years ago
0
Feature request: simulate fixed CDR3 length
#249
scharch
closed
5 years ago
2
Simulate functional repertoire only
#248
scharch
closed
5 years ago
6
Can't simulate naive sequences?
#247
scharch
closed
6 years ago
3
Can't simulate constant SHM with derived parameters
#246
scharch
closed
6 years ago
3
Assertion error when partitioning on a single seed
#245
williamdlees
closed
6 years ago
4
installation issues and problem with waterer.py
#244
Pezhvuk
closed
6 years ago
13
Minor docs tweaks.
#243
matsen
closed
6 years ago
0
Improve the build system for non-default gcc locations
#242
s-andrews
closed
6 years ago
9
ig-sw binary d.n.e
#241
ecudone
closed
6 years ago
1
Simulation section of the manual could use some love
#240
matsen
closed
6 years ago
1
Integrate cluster size/number options
#239
metasoarous
closed
5 years ago
2
Add option to force a stop-codon-less naive sequence
#238
krdav
closed
5 years ago
1
add conda control
#237
psathyrella
closed
6 years ago
0
OS-X support
#236
laserson
closed
6 years ago
13
Allele finding and primer bias
#235
krdav
opened
7 years ago
1
IndexError: string index out of range
#234
jotwin
closed
7 years ago
5
Add task and node specification for srun
#233
atombaby
closed
7 years ago
0
--linearham changes
#232
dunleavy005
closed
6 years ago
1
Why are there forbidden characters in sequence names?
#231
laserson
closed
6 years ago
3
Add Python 3 support
#230
laserson
closed
6 years ago
4
figure out if large mut freq rescaling factors indicate a problem
#229
psathyrella
closed
4 years ago
1
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