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quantumjot
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btrack
Bayesian multi-object tracking
https://btrack.readthedocs.io
MIT License
312
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Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
#410
dependabot[bot]
closed
2 months ago
0
combine cellpose segmentation with tracking result into h5 file[FEATURE REQUEST]
#409
fabricesenger
opened
4 months ago
2
[FEATURE REQUEST] Better documentation on the config file
#408
phisanti
opened
5 months ago
1
[FEATURE REQUEST] Add constraints to tracking and possibly variable search radius.
#407
lupinthief
opened
7 months ago
0
Filter tracks by value
#406
MerihEkin
opened
7 months ago
2
[BUG] not all objects passed to btrack are tracked - some seem to get lost
#405
lupinthief
opened
7 months ago
1
Fix linting error following #398 merge
#404
quantumjot
closed
8 months ago
1
Remove napari hub preview
#403
quantumjot
closed
8 months ago
0
Add Optuna Documentation and Pre-Optimized Configuration Parameters
#402
timsmsmsm
opened
8 months ago
1
Correct passing of arguments `optimize`->`optimize`
#401
ianhi
closed
9 months ago
2
[FEATURE REQUEST] Vector field to aid tracking
#400
henriquenunez
opened
9 months ago
5
[FEATURE REQUEST] 2D tracking with no branching and short links
#399
manerotoni
closed
9 months ago
2
fixed centroid_type error for multichannel intensity_images
#398
nthndy
closed
8 months ago
1
Update README.md
#397
quantumjot
closed
1 year ago
1
[BUG] configuration volume is None
#396
remyeltorro
closed
8 months ago
2
Update napari hub DESCRIPTION.md
#395
quantumjot
closed
1 year ago
1
Add generation to docstrings
#394
quantumjot
closed
1 year ago
2
[WIP] Attempt to make `config_name` `QComboBox` ediable & allow for different config names
#393
paddyroddy
closed
1 year ago
0
[WIP] Stop duplicate names
#392
paddyroddy
closed
1 year ago
0
Clarify some variable names and save by file stem as default
#391
paddyroddy
closed
1 year ago
3
Turn off `codecov/patch`
#390
paddyroddy
closed
1 year ago
2
[BUG] Default config name is used when saving config from napari plugin
#389
quantumjot
opened
1 year ago
8
[FEATURE REQUEST] Write a test for the new `enable_optimisation` flag
#388
paddyroddy
opened
1 year ago
0
[BUG] `volume` isn't set as expected, in the `test_tracker_graph` test
#387
paddyroddy
closed
1 year ago
4
[FEATURE REQUEST] Rename `Method` tab to `Basic`
#386
paddyroddy
closed
1 year ago
1
[FEATURE REQUEST] If `enable_optimisation` is False then disable tab/nested widgets
#385
paddyroddy
closed
1 year ago
2
[FEATURE REQUEST] In tests change `prob_not_assign` to `0.001`
#384
paddyroddy
closed
1 year ago
1
[FEATURE REQUEST] Add a warning if `enable_optimisation == False` but optimising
#383
paddyroddy
closed
1 year ago
1
Update registry with new commit hash
#382
paddyroddy
closed
1 year ago
0
[BUG] Values in `Optimiser` tab aren't being updated from config
#381
paddyroddy
closed
1 year ago
3
`generation` missing from list of `Tracklet` attributes
#380
p-j-smith
closed
1 year ago
0
Don't set widget values in the widgets (as done from file)
#379
paddyroddy
closed
1 year ago
2
Improvements to hypothesis tab
#378
paddyroddy
closed
1 year ago
4
[FEATURE REQUEST] Remove default values for `napari` widgets
#377
paddyroddy
closed
1 year ago
0
Add default ranges for numerical issues
#376
paddyroddy
closed
1 year ago
2
[FEATURE REQUEST] Should example configs be taken from `lowe-lab-ucl/btrack-examples`?
#375
paddyroddy
closed
1 year ago
2
Change values from `0.001` to `0.1` / use config from `btrack-examples`
#374
paddyroddy
closed
1 year ago
3
[FEATURE REQUEST] Update napari hub preview page with new plugin details
#373
quantumjot
closed
1 year ago
0
[FEATURE REQUEST] Set default value of p(not track)
#372
quantumjot
closed
1 year ago
8
[FEATURE REQUEST] Improvements to hypothesis tab
#371
quantumjot
closed
1 year ago
1
Add title, logo, and docs link
#370
paddyroddy
closed
1 year ago
2
Add writer to plugin for exporting a Tracks layer to hdf
#369
p-j-smith
closed
1 year ago
6
Move stuff from motion to match original picture
#368
paddyroddy
closed
1 year ago
1
Change widget heading names
#367
paddyroddy
closed
1 year ago
2
[FEATURE REQUEST] Min/max values for numeric `napari` widgets should be specified
#366
paddyroddy
closed
1 year ago
2
Ignore dummy objects when guessing ndim in `utils.tracks_to_napari`
#365
p-j-smith
closed
1 year ago
2
Add prune to manifest
#364
quantumjot
closed
1 year ago
2
Change hypotheses boxes to `QListWidget` to reduce space
#363
paddyroddy
closed
1 year ago
3
[BUG] Shape of tracks layer changes after export and re-loading
#362
p-j-smith
closed
1 year ago
5
`btrack.utils.segmentation_to_objects` fails if you are trying to measure an `intensity_image` from a single segment
#361
nthndy
opened
1 year ago
0
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