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quantumjot
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btrack
Bayesian multi-object tracking
https://btrack.readthedocs.io
MIT License
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Add tooltips to all labels - not just to the widgets themselves
#360
p-j-smith
closed
1 year ago
2
Remove excess spacing between the tab widget and the Run button
#359
p-j-smith
closed
1 year ago
2
Show progress bar in plugin when running tracking
#358
p-j-smith
closed
1 year ago
6
Expose `prob_not_assign` in the plugin
#357
p-j-smith
closed
1 year ago
2
Add btrack logo to napari widget
#356
quantumjot
closed
1 year ago
1
Create tabbed widgets
#355
paddyroddy
closed
1 year ago
4
Changes to `update_segmentation`
#354
nthndy
closed
1 year ago
12
Add support for `3.11`
#353
paddyroddy
closed
1 year ago
2
Use `QtPy` to create the btrack napari plugin widgets rather than `magicgui`
#352
p-j-smith
closed
1 year ago
0
Switch out `magicgui` in favour of `QtWidgets`
#350
paddyroddy
closed
1 year ago
6
Upgrade pydantic
#349
paddyroddy
opened
1 year ago
1
Upgrade `cvxopt`
#348
paddyroddy
closed
1 year ago
2
[FEATURE REQUEST] Upgrade to `pydantic=2`
#347
paddyroddy
opened
1 year ago
0
[BUG] Wheel contains unneccessary files
#346
quantumjot
closed
1 year ago
1
Pin pydantic version to <2
#345
quantumjot
closed
1 year ago
2
Issues with Pydantic when installing btrack
#344
AlishaWayra
opened
1 year ago
1
[FEATURE REQUEST] Investigate `scikit-build-core`
#343
paddyroddy
opened
1 year ago
0
Pin version of pydantic to <2
#342
quantumjot
closed
1 year ago
1
Add `x` back to functional evaluation while loading legacy files
#341
quantumjot
closed
1 year ago
2
Legacy loader fails
#340
quantumjot
closed
1 year ago
2
bTrack cell labeling and mitosis detection problems
#338
emthilak
closed
1 year ago
0
Split hypothesis could consider geometry from predicted new position
#337
quantumjot
opened
1 year ago
0
Fix formatting for developer guide
#336
quantumjot
closed
1 year ago
1
Add more test coverage of `HDF5FileHandler`
#335
quantumjot
opened
1 year ago
0
Add legacy h5 support and tree inspection
#334
quantumjot
closed
1 year ago
4
Correct saving_tracks.rst
#333
zsdqui
closed
1 year ago
0
Change to default `black`
#332
paddyroddy
closed
1 year ago
2
Move `fixture`s into `conftest.py`
#331
paddyroddy
closed
1 year ago
2
Test v2 `pydantic`
#330
paddyroddy
closed
1 year ago
1
Add updated `tox` configuration
#329
paddyroddy
closed
1 year ago
4
Some typing changes, general improvements, utilising generators etc.
#328
paddyroddy
closed
1 year ago
2
[FEATURE REQUEST] Add `3.11` support
#327
paddyroddy
closed
1 year ago
1
Minimise tox dependencies
#326
paddyroddy
closed
1 year ago
2
Drop python 3.8 support & napari backends
#325
paddyroddy
closed
1 year ago
3
How does the "visual" TRACKING_UPDATES work without adding any user defined features to objects?
#324
Sagnik700
closed
1 year ago
2
Correct way to add parameters in objects
#321
Sagnik700
closed
1 year ago
5
Fix plugin name in example script
#320
quantumjot
closed
1 year ago
2
Nuclei mask slightly overlap, causing btrack to assign them the same ID
#318
HaoranYueRyan
closed
1 year ago
5
Handle 4D data in the napari plugin
#317
p-j-smith
closed
1 year ago
2
[BUG] napari plugin cannot handle 4D data
#316
p-j-smith
closed
1 year ago
0
Drop `python=3.8` support and add `3.11` support
#315
paddyroddy
closed
1 year ago
1
Add test for `dummy` IO
#314
quantumjot
closed
1 year ago
2
[FEATURE REQUEST] Add tests for reading and writing dummies to h5 files
#313
quantumjot
closed
1 year ago
0
Fixing #310 and #311
#312
nthndy
closed
1 year ago
3
Minor formatting issue
#311
nthndy
closed
1 year ago
1
Cannot load tracks due to track write not exporting dummy objects
#310
nthndy
closed
1 year ago
1
Testing C++11 compilation
#309
quantumjot
closed
1 year ago
11
[BUG] glibc incompatibility
#308
markdane
closed
1 year ago
3
Add issue templates and `SystemInformation` class
#307
quantumjot
closed
1 year ago
2
Fix mac silicon for napari
#306
paddyroddy
closed
1 year ago
6
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