quantumjot btrack issues

quantumjot / btrack

Bayesian multi-object tracking

https://btrack.readthedocs.io

MIT License

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issues

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combine cellpose segmentation with tracking result into h5 file[FEATURE REQUEST]

#409 fabricesenger opened 11 hours ago
2
[FEATURE REQUEST] Better documentation on the config file

#408 phisanti opened 1 month ago
0
[FEATURE REQUEST] Add constraints to tracking and possibly variable search radius.

#407 lupinthief opened 3 months ago
0
Filter tracks by value

#406 MerihEkin opened 3 months ago
2
[BUG] not all objects passed to btrack are tracked - some seem to get lost

#405 lupinthief opened 3 months ago
1
Fix linting error following #398 merge

#404 quantumjot closed 4 months ago
1
Remove napari hub preview

#403 quantumjot closed 4 months ago
0
Add Optuna Documentation and Pre-Optimized Configuration Parameters

#402 timsmsmsm opened 4 months ago
1
Correct passing of arguments `optimize`->`optimize`

#401 ianhi closed 4 months ago
2
[FEATURE REQUEST] Vector field to aid tracking

#400 henriquenunez opened 5 months ago
5
[FEATURE REQUEST] 2D tracking with no branching and short links

#399 manerotoni closed 5 months ago
2
fixed centroid_type error for multichannel intensity_images

#398 nthndy closed 4 months ago
1
Update README.md

#397 quantumjot closed 10 months ago
1
[BUG] configuration volume is None

#396 remyeltorro closed 3 months ago
2
Update napari hub DESCRIPTION.md

#395 quantumjot closed 11 months ago
1
Add generation to docstrings

#394 quantumjot closed 11 months ago
2
[WIP] Attempt to make `config_name` `QComboBox` ediable & allow for different config names

#393 paddyroddy closed 11 months ago
0
[WIP] Stop duplicate names

#392 paddyroddy closed 11 months ago
0
Clarify some variable names and save by file stem as default

#391 paddyroddy closed 11 months ago
3
Turn off `codecov/patch`

#390 paddyroddy closed 11 months ago
2
[BUG] Default config name is used when saving config from napari plugin

#389 quantumjot opened 11 months ago
8
[FEATURE REQUEST] Write a test for the new `enable_optimisation` flag

#388 paddyroddy opened 11 months ago
0
[BUG] `volume` isn't set as expected, in the `test_tracker_graph` test

#387 paddyroddy closed 11 months ago
4
[FEATURE REQUEST] Rename `Method` tab to `Basic`

#386 paddyroddy closed 11 months ago
1
[FEATURE REQUEST] If `enable_optimisation` is False then disable tab/nested widgets

#385 paddyroddy closed 11 months ago
2
[FEATURE REQUEST] In tests change `prob_not_assign` to `0.001`

#384 paddyroddy closed 11 months ago
1
[FEATURE REQUEST] Add a warning if `enable_optimisation == False` but optimising

#383 paddyroddy closed 11 months ago
1
Update registry with new commit hash

#382 paddyroddy closed 11 months ago
0
[BUG] Values in `Optimiser` tab aren't being updated from config

#381 paddyroddy closed 11 months ago
3
`generation` missing from list of `Tracklet` attributes

#380 p-j-smith closed 11 months ago
0
Don't set widget values in the widgets (as done from file)

#379 paddyroddy closed 11 months ago
2
Improvements to hypothesis tab

#378 paddyroddy closed 11 months ago
4
[FEATURE REQUEST] Remove default values for `napari` widgets

#377 paddyroddy closed 11 months ago
0
Add default ranges for numerical issues

#376 paddyroddy closed 11 months ago
2
[FEATURE REQUEST] Should example configs be taken from `lowe-lab-ucl/btrack-examples`?

#375 paddyroddy closed 11 months ago
2
Change values from `0.001` to `0.1` / use config from `btrack-examples`

#374 paddyroddy closed 11 months ago
3
[FEATURE REQUEST] Update napari hub preview page with new plugin details

#373 quantumjot closed 11 months ago
0
[FEATURE REQUEST] Set default value of p(not track)

#372 quantumjot closed 11 months ago
8
[FEATURE REQUEST] Improvements to hypothesis tab

#371 quantumjot closed 11 months ago
1
Add title, logo, and docs link

#370 paddyroddy closed 11 months ago
2
Add writer to plugin for exporting a Tracks layer to hdf

#369 p-j-smith closed 11 months ago
6
Move stuff from motion to match original picture

#368 paddyroddy closed 11 months ago
1
Change widget heading names

#367 paddyroddy closed 11 months ago
2
[FEATURE REQUEST] Min/max values for numeric `napari` widgets should be specified

#366 paddyroddy closed 11 months ago
2
Ignore dummy objects when guessing ndim in `utils.tracks_to_napari`

#365 p-j-smith closed 11 months ago
2
Add prune to manifest

#364 quantumjot closed 11 months ago
2
Change hypotheses boxes to `QListWidget` to reduce space

#363 paddyroddy closed 11 months ago
3
[BUG] Shape of tracks layer changes after export and re-loading

#362 p-j-smith closed 11 months ago
5
`btrack.utils.segmentation_to_objects` fails if you are trying to measure an `intensity_image` from a single segment

#361 nthndy opened 11 months ago
0
Add tooltips to all labels - not just to the widgets themselves

#360 p-j-smith closed 11 months ago
2