raerose01 deconstructSigs issues

raerose01 / deconstructSigs

deconstructSigs

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example VCF

#80 ilivyatan opened 4 months ago
0
object 'BSgenome.Hsapiens.UCSC.hg38' not found

#79 dalalsult closed 4 months ago
0
Question regarding combine mutational signature from different resources

#78 marshelma opened 7 months ago
0
tri.counts.method for hg38 genome

#77 tanubrata opened 1 year ago
0
Switch df[,col] to df[[col]] to get column vectors

#76 rhagenson opened 1 year ago
0
Enable the usage of custom genome and exome in whichSignatures

#75 Yunuuuu opened 2 years ago
1
moving data content to sysdata?

#74 pawelqs opened 2 years ago
0
whichsignatures not working

#73 temizna opened 2 years ago
0
Normalisation approaches for targeted panels

#72 ARChakravarthy opened 2 years ago
1
Please release v1.9.0 for automated installations

#71 naumenko-sa closed 3 years ago
2
Update whichSignatures.R

#70 ljl-suosi opened 3 years ago
2
Was blacklist used to create tri.count.genome?

#69 yasunorikogure closed 3 years ago
2
Normalization method for whole exome data

#68 seunghun23 opened 3 years ago
0
mut.to.sigs.input for DBS signatures creates empty output

#67 kittysher opened 4 years ago
5
Update to Mutational Signatures (v3.1 - June 2020)

#66 kvaldez closed 4 years ago
1
plotSignatures do not display title

#65 Jingjiao-ma opened 4 years ago
1
normalization of hg38 exome

#64 ChelseaCHENX opened 4 years ago
1
vcf.to.sigs.input() Error arguments imply differing number of rows: 1, 0

#63 alpreyes opened 4 years ago
4
Cosine Similarity

#62 DarioS opened 4 years ago
0
Error With bwakit Alignments

#61 DarioS opened 4 years ago
0
update to COSMIC Mutational Signatures (v3 - May 2019)

#60 chjp closed 4 years ago
1
mut.to.sigs.input for DBS

#59 darwinchangz closed 4 years ago
1
Doubt when using updated signature matrices

#58 Dagsbio closed 4 years ago
1
Added stacked bar chart and smart db colouring

#57 sfacista closed 4 years ago
1
New COSMIC signatures (v3)

#56 rahulk87 closed 4 years ago
4
Fix DBS input from file

#55 rbonneville closed 4 years ago
0
Plotting the signatures gives error

#54 beginner984 closed 4 years ago
1
Issue in mut.to.sigs.input, "Error in ans[] <- x : replacement has length zero"

#53 Salvobioinfo closed 4 years ago
4
"signature weights" no longer displayed in graphics

#52 spete021 closed 4 years ago
4
Trinucleotide Counts for More Genomes

#51 DarioS opened 5 years ago
0
signature matrix for new Alexandrov SBS signatures?

#50 emham closed 4 years ago
8
makePie fails with only 1 signature weight non-zero and/or with unknown=0

#49 tedtoal opened 5 years ago
0
Unknown error with my data

#48 beginner984 opened 5 years ago
0
custom panel normalization

#47 idanbudin opened 5 years ago
1
Error on installation

#46 mozack closed 5 years ago
3
Mutational Signatures for mouse mutation data?

#45 SNRNS opened 5 years ago
0
How to make signatures for multiple samples at once?

#44 stevekm opened 6 years ago
0
Filtering exome SNVs

#43 ysbioinfo opened 6 years ago
0
h38 support for deconstructSigs

#42 AdamuUu closed 6 years ago
1
Error in FUN(left, right) : non-numeric argument to binary operator

#41 Gandalfy closed 6 years ago
3
A suspected bug leading to "Error in `[.data.frame`(x, i, j) : undefined columns selected" in "mut.to.sigs.input"

#40 b-niu closed 4 years ago
4
mut.to.sigs.input out of memory error

#39 lpalomerol closed 5 years ago
1
mut.to.sigs.input function does not work even on sample data

#38 mkkuhner closed 6 years ago
3
Tri nucleoide frequency for exome data

#37 fitbio closed 6 years ago
4
Re:tri nucleotide frequency of exome and genome.

#36 aslam24 closed 6 years ago
1
error in converting vcf to sigs.input

#35 Sumithrasank closed 5 years ago
1
Weighting of mutations

#34 lima1 opened 6 years ago
0
subscript out of bounds

#33 ZackDC closed 6 years ago
4
Possible to save `plotSignatures` object and print later?

#32 stevekm closed 4 years ago
4
chr name problem for GRCh38

#31 Wszwei opened 6 years ago
0