rafalab bumphunter issues

rafalab / bumphunter

bumphunter

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issues

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Clarifying "distance" and "inside distance"

#32 dsimps1993 opened 4 months ago
0
Request to Replace Sweave Vignettes with R Markdown

#31 sonali8434 opened 1 year ago
1
Release 3 15

#30 selviguharaj closed 2 years ago
0
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

#29 selviguharaj closed 3 years ago
0
Why the bumphunter function gives the output with identical start and end genomic regions from the dataset?

#28 JEBUNNAHAR opened 4 years ago
0
regionFinder not sorting positions

#27 kperzel opened 4 years ago
0
Fix namespace genes

#26 lcolladotor opened 4 years ago
1
genes() not found -- namespace issue

#25 lcolladotor opened 4 years ago
0
Stall after [bumphunterEngine] Smoothing coefficients.

#24 rrydbirk closed 3 years ago
2
Release 3 8

#23 sampoll opened 5 years ago
0
unclear how "covers" is defined

#22 ShanEllis opened 6 years ago
1
Bugfix

#21 sampoll closed 6 years ago
0
problem with GenomicRanges::nearest in annotateNearest

#20 sampoll opened 7 years ago
0
Port 1.17.2 (bioc-devel) to bioc-release

#19 lcolladotor opened 7 years ago
0
bumphunter(): "Error in nulltabs[[i]] " depending on the number of bootstrap replicates

#18 mtellezp opened 7 years ago
5
v1.17.2 -- Adds supported for TxDb objects with gene ids from ENSEMBL/GENCODE

#17 lcolladotor closed 7 years ago
2
Devel

#16 sampoll closed 7 years ago
0
Make annotateTranscripts() and matchGenes() more flexible to handle other type of gene ids.

#15 lcolladotor closed 7 years ago
1
Error in `matchGenes` when selecting subject index?

#14 JonBarenboim opened 7 years ago
1
Smoothing weights should be inverse stdev

#13 kdkorthauer closed 8 years ago
0
Switch from species() to organism(). Fixes https://github.com/ririzarr/bumphunter/issues/11

#12 lcolladotor closed 7 years ago
2
species() is defunct in Bioc 3.4

#11 lcolladotor closed 7 years ago
1
How to choose the `minInSpan` argument of `locfitByCluster`?

#10 lcolladotor opened 8 years ago
0
Bumphunter repo not updated with Bioconductor

#9 lcolladotor closed 8 years ago
1
v1.9.5 -- fixes https://github.com/ririzarr/bumphunter/issues/7

#8 lcolladotor closed 8 years ago
0
Missing import locfit::lp

#7 lcolladotor closed 8 years ago
3
Documentation - Appropriate Normalization

#6 mehrankr opened 8 years ago
0
Update bumphunter.R

#5 andrewejaffe closed 8 years ago
1
NA case in matchGenes() for CS and CE objects

#4 lcolladotor closed 9 years ago
0
Fixed some 1.7.3 bugs and added some tests

#3 lcolladotor closed 9 years ago
9
error loading package

#2 radivot closed 9 years ago
5
Docs for supporting non-hg19 genomes

#1 lcolladotor closed 9 years ago
14