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rajanil
/
fastStructure
A variational framework for inferring population structure from SNP genotype data.
MIT License
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Issue while using faststructure
#83
AvniMann14
opened
4 days ago
0
fastStructure does not produce any output
#82
arminmm91
opened
2 weeks ago
0
python setup.py build_ext error: Cython.Compiler.Errors.CompileError: parse_bed.pyx
#81
bensutherland
opened
8 months ago
7
cimport numpy as np ^ SyntaxError: invalid syntax
#80
ZhenyaoYe
opened
1 year ago
0
Error compiling Cython file
#79
elizeng
opened
1 year ago
0
ImportError: No module named utils
#78
maernster
opened
1 year ago
0
bacterial data
#77
lanlan0210
opened
1 year ago
0
Structure_threader run: error: argument -mv: not allowed with argument -fs
#76
tamsinlh
opened
1 year ago
0
"error: command 'gcc' failed with exit status 1"; building setup.py
#75
quinn-ca
opened
1 year ago
0
Added report.py
#74
yenon118
opened
1 year ago
0
ModuleNotFoundError: No module named 'vars.admixprop'.....or....ImportError: No module named numpy
#73
Razi1026
opened
1 year ago
0
Choosing K problem
#72
malikergin
opened
1 year ago
0
color assignment not following K
#71
rturba
opened
2 years ago
2
Handling bacterial data
#70
domenico-simone
opened
2 years ago
0
Empty Cluster
#69
Bahman1991
opened
2 years ago
1
identify the individuals on the chart
#68
isabelavera
opened
2 years ago
0
Input file
#67
marco91sol
opened
3 years ago
0
Order of samples in distruct visualisation by --popmap
#66
ARW-UBT
opened
3 years ago
3
Empty clusters
#65
wedge015
opened
3 years ago
1
error in distruct.py
#64
sekhwal
opened
3 years ago
1
Missing module errors
#63
konradtaube
opened
3 years ago
2
Bioconda faststructure
#62
ARW-UBT
opened
3 years ago
0
Issue using fastStructure online
#61
sekhwal
opened
3 years ago
0
numpy.AxisError: axis 1 is out of bounds for array of dimension 1
#60
jaberdugoc
opened
3 years ago
1
distruct.py label individuals
#59
wbsimey
opened
4 years ago
1
structure format
#58
wbsimey
opened
4 years ago
4
Estimating the variational parameters with multiple restarts
#57
ericopolo
opened
4 years ago
0
fastStructure can not import "allelefreq" module
#56
JingjingYang1226
opened
4 years ago
10
K=2 is the best? Or K =9?
#55
pwang16
opened
4 years ago
2
Running fastStructure on haploids
#54
drdna
opened
4 years ago
0
Seemingly infinite "failed" returned
#53
MboiTui
opened
4 years ago
0
Seemingly infinite "failed
#52
MboiTui
opened
4 years ago
0
fixed links to paper and preprint
#51
rvosa
opened
4 years ago
0
gsl dependency
#50
seb951
opened
4 years ago
0
Whatever K be specificed, data were explain structure in data=2
#49
jun3234
opened
5 years ago
0
Prior error
#48
frodaf
opened
5 years ago
2
structure.py running problem
#47
Diamonds95
opened
5 years ago
0
run duration
#46
linsson
opened
5 years ago
0
Rgiordan
#45
rgiordan
closed
5 years ago
0
bed to genome file
#44
rgiordan
closed
5 years ago
1
Error with distruct - popfile
#43
vin6
opened
5 years ago
1
Type error when running test data
#42
hrivera28
opened
6 years ago
6
population order in plot
#41
caolijun
closed
6 years ago
0
Marginal likelihood = nan
#40
nadjenajar
opened
6 years ago
0
Missing Module
#39
junex
opened
6 years ago
13
error in distruct.py
#38
ytguojian
opened
6 years ago
4
fastStructure with pool seq?
#37
DavidEHufnagel
opened
6 years ago
0
distruct.py fails without X display (workaround included)
#36
draeath
opened
6 years ago
1
population label issue
#35
beeul25
opened
6 years ago
0
How to use faststructure deal with microsatellite?
#34
wangzhennan14
opened
7 years ago
1
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