rajanil fastStructure issues

rajanil / fastStructure

A variational framework for inferring population structure from SNP genotype data.

MIT License

134 stars 50 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Issue while using faststructure

#83 AvniMann14 opened 3 months ago
0
fastStructure does not produce any output

#82 arminmm91 opened 3 months ago
0
python setup.py build_ext error: Cython.Compiler.Errors.CompileError: parse_bed.pyx

#81 bensutherland opened 11 months ago
7
cimport numpy as np ^ SyntaxError: invalid syntax

#80 ZhenyaoYe opened 1 year ago
0
Error compiling Cython file

#79 elizeng opened 1 year ago
0
ImportError: No module named utils

#78 maernster opened 1 year ago
0
bacterial data

#77 lanlan0210 opened 1 year ago
0
Structure_threader run: error: argument -mv: not allowed with argument -fs

#76 tamsinlh opened 1 year ago
0
"error: command 'gcc' failed with exit status 1"; building setup.py

#75 quinn-ca opened 1 year ago
0
Added report.py

#74 yenon118 opened 1 year ago
0
ModuleNotFoundError: No module named 'vars.admixprop'.....or....ImportError: No module named numpy

#73 Razi1026 opened 2 years ago
0
Choosing K problem

#72 malikergin opened 2 years ago
0
color assignment not following K

#71 rturba opened 2 years ago
2
Handling bacterial data

#70 domenico-simone opened 2 years ago
0
Empty Cluster

#69 Bahman1991 opened 2 years ago
1
identify the individuals on the chart

#68 isabelavera opened 3 years ago
0
Input file

#67 marco91sol opened 3 years ago
0
Order of samples in distruct visualisation by --popmap

#66 ARW-UBT opened 3 years ago
3
Empty clusters

#65 wedge015 opened 3 years ago
1
error in distruct.py

#64 sekhwal opened 3 years ago
1
Missing module errors

#63 konradtaube opened 3 years ago
2
Bioconda faststructure

#62 ARW-UBT opened 3 years ago
0
Issue using fastStructure online

#61 sekhwal opened 3 years ago
0
numpy.AxisError: axis 1 is out of bounds for array of dimension 1

#60 jaberdugoc opened 4 years ago
1
distruct.py label individuals

#59 wbsimey opened 4 years ago
1
structure format

#58 wbsimey opened 4 years ago
4
Estimating the variational parameters with multiple restarts

#57 ericopolo opened 4 years ago
0
fastStructure can not import "allelefreq" module

#56 JingjingYang1226 opened 4 years ago
10
K=2 is the best? Or K =9?

#55 pwang16 opened 4 years ago
2
Running fastStructure on haploids

#54 drdna opened 4 years ago
0
Seemingly infinite "failed" returned

#53 MboiTui opened 4 years ago
0
Seemingly infinite "failed

#52 MboiTui opened 4 years ago
0
fixed links to paper and preprint

#51 rvosa opened 5 years ago
0
gsl dependency

#50 seb951 opened 5 years ago
0
Whatever K be specificed, data were explain structure in data=2

#49 jun3234 opened 5 years ago
0
Prior error

#48 frodaf opened 5 years ago
2
structure.py running problem

#47 Diamonds95 opened 5 years ago
0
run duration

#46 linsson opened 5 years ago
0
Rgiordan

#45 rgiordan closed 5 years ago
0
bed to genome file

#44 rgiordan closed 5 years ago
1
Error with distruct - popfile

#43 vin6 opened 6 years ago
1
Type error when running test data

#42 hrivera28 opened 6 years ago
6
population order in plot

#41 caolijun closed 6 years ago
0
Marginal likelihood = nan

#40 nadjenajar opened 6 years ago
0
Missing Module

#39 junex opened 6 years ago
13
error in distruct.py

#38 ytguojian opened 6 years ago
4
fastStructure with pool seq?

#37 DavidEHufnagel opened 6 years ago
0
distruct.py fails without X display (workaround included)

#36 draeath opened 6 years ago
1
population label issue

#35 beeul25 opened 6 years ago
0
How to use faststructure deal with microsatellite?

#34 wangzhennan14 opened 7 years ago
1