rajanil fastStructure issues

rajanil / fastStructure

A variational framework for inferring population structure from SNP genotype data.

MIT License

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issues

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Issue while using faststructure

#83 AvniMann14 opened 4 days ago
0
fastStructure does not produce any output

#82 arminmm91 opened 2 weeks ago
0
python setup.py build_ext error: Cython.Compiler.Errors.CompileError: parse_bed.pyx

#81 bensutherland opened 8 months ago
7
cimport numpy as np ^ SyntaxError: invalid syntax

#80 ZhenyaoYe opened 1 year ago
0
Error compiling Cython file

#79 elizeng opened 1 year ago
0
ImportError: No module named utils

#78 maernster opened 1 year ago
0
bacterial data

#77 lanlan0210 opened 1 year ago
0
Structure_threader run: error: argument -mv: not allowed with argument -fs

#76 tamsinlh opened 1 year ago
0
"error: command 'gcc' failed with exit status 1"; building setup.py

#75 quinn-ca opened 1 year ago
0
Added report.py

#74 yenon118 opened 1 year ago
0
ModuleNotFoundError: No module named 'vars.admixprop'.....or....ImportError: No module named numpy

#73 Razi1026 opened 1 year ago
0
Choosing K problem

#72 malikergin opened 1 year ago
0
color assignment not following K

#71 rturba opened 2 years ago
2
Handling bacterial data

#70 domenico-simone opened 2 years ago
0
Empty Cluster

#69 Bahman1991 opened 2 years ago
1
identify the individuals on the chart

#68 isabelavera opened 2 years ago
0
Input file

#67 marco91sol opened 3 years ago
0
Order of samples in distruct visualisation by --popmap

#66 ARW-UBT opened 3 years ago
3
Empty clusters

#65 wedge015 opened 3 years ago
1
error in distruct.py

#64 sekhwal opened 3 years ago
1
Missing module errors

#63 konradtaube opened 3 years ago
2
Bioconda faststructure

#62 ARW-UBT opened 3 years ago
0
Issue using fastStructure online

#61 sekhwal opened 3 years ago
0
numpy.AxisError: axis 1 is out of bounds for array of dimension 1

#60 jaberdugoc opened 3 years ago
1
distruct.py label individuals

#59 wbsimey opened 4 years ago
1
structure format

#58 wbsimey opened 4 years ago
4
Estimating the variational parameters with multiple restarts

#57 ericopolo opened 4 years ago
0
fastStructure can not import "allelefreq" module

#56 JingjingYang1226 opened 4 years ago
10
K=2 is the best? Or K =9?

#55 pwang16 opened 4 years ago
2
Running fastStructure on haploids

#54 drdna opened 4 years ago
0
Seemingly infinite "failed" returned

#53 MboiTui opened 4 years ago
0
Seemingly infinite "failed

#52 MboiTui opened 4 years ago
0
fixed links to paper and preprint

#51 rvosa opened 4 years ago
0
gsl dependency

#50 seb951 opened 4 years ago
0
Whatever K be specificed, data were explain structure in data=2

#49 jun3234 opened 5 years ago
0
Prior error

#48 frodaf opened 5 years ago
2
structure.py running problem

#47 Diamonds95 opened 5 years ago
0
run duration

#46 linsson opened 5 years ago
0
Rgiordan

#45 rgiordan closed 5 years ago
0
bed to genome file

#44 rgiordan closed 5 years ago
1
Error with distruct - popfile

#43 vin6 opened 5 years ago
1
Type error when running test data

#42 hrivera28 opened 6 years ago
6
population order in plot

#41 caolijun closed 6 years ago
0
Marginal likelihood = nan

#40 nadjenajar opened 6 years ago
0
Missing Module

#39 junex opened 6 years ago
13
error in distruct.py

#38 ytguojian opened 6 years ago
4
fastStructure with pool seq?

#37 DavidEHufnagel opened 6 years ago
0
distruct.py fails without X display (workaround included)

#36 draeath opened 6 years ago
1
population label issue

#35 beeul25 opened 6 years ago
0
How to use faststructure deal with microsatellite?

#34 wangzhennan14 opened 7 years ago
1