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polyA
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Simulation
#94
nukappa
closed
8 years ago
0
Replace dummy fragment size distribution with bioanalyzer profile
#93
mschilli87
closed
8 years ago
1
Add lower bound
#92
nukappa
closed
8 years ago
0
Add lower bound
#91
mschilli87
closed
8 years ago
1
Unify coordinates
#90
mschilli87
opened
8 years ago
2
Simulation
#89
nukappa
closed
8 years ago
0
Enforce overlap of oligo-d(T) & poly(A) tail
#88
mschilli87
closed
8 years ago
3
Consider oligo-d(T) strech length when calculating hybridization probabilities
#87
mschilli87
opened
8 years ago
0
Improve simulations and enrich unit tests
#86
mschilli87
closed
8 years ago
1
Add lower bound
#85
mschilli87
closed
8 years ago
4
Fix numerics
#84
nukappa
closed
8 years ago
0
add lower bound (don't merge)
#83
mschilli87
closed
8 years ago
4
remove read redundancy from estimate_tail_length function
#82
nukappa
opened
8 years ago
2
fix numerical issues caused by eps variable
#81
mschilli87
closed
8 years ago
4
fix numerical issues caused by eps variable (wrong target branch)
#80
mschilli87
closed
8 years ago
1
remove eps from estimate_poly_tail_length
#79
mschilli87
closed
8 years ago
1
unit test fails if all simulated fragments have the same length
#78
mschilli87
closed
8 years ago
2
Improve simulations and enrich unit tests
#77
mschilli87
closed
8 years ago
4
bugs in estimation of length
#76
nukappa
opened
8 years ago
2
Simulation
#75
nukappa
closed
8 years ago
0
New tests [tested OK]
#74
nukappa
closed
8 years ago
1
Update single utr no p ai genes
#73
nukappa
closed
8 years ago
2
Update single-UTR/no-pAi gene lists
#72
mschilli87
closed
8 years ago
2
Check tests for build status
#71
nukappa
closed
8 years ago
0
Fix pAi gene bug
#70
nukappa
closed
8 years ago
2
Fix pAi gene bug
#69
mschilli87
closed
8 years ago
3
Check tests for build status
#68
mschilli87
closed
8 years ago
1
no pAi genes found
#67
mschilli87
closed
8 years ago
2
shift in estimations from simulated data
#66
mschilli87
closed
8 years ago
50
build status is positive even though unit test failed
#65
mschilli87
closed
8 years ago
0
New tests
#64
mschilli87
closed
8 years ago
13
switched simulation from fixed fragment size to distribution
#63
mschilli87
closed
8 years ago
7
Simulation
#62
nukappa
closed
8 years ago
1
added simulation script & corresponding unit test
#61
mschilli87
closed
8 years ago
4
cast coordinates to integers
#60
nukappa
opened
8 years ago
5
Build and coverage
#59
nukappa
closed
8 years ago
0
Build and coverage
#58
nukappa
closed
8 years ago
0
added build test & code coverage integration
#57
mschilli87
closed
8 years ago
5
tested code improvements
#56
mschilli87
closed
8 years ago
3
simulations
#55
nukappa
opened
8 years ago
1
assess internal priming vs tail
#54
nukappa
opened
8 years ago
0
try to assess bioanalyzer profile from data
#53
nukappa
opened
8 years ago
0
identify motifs which potentially bias the tagmentation step
#52
nukappa
opened
8 years ago
0
Fix utr3 annotation
#51
nukappa
closed
8 years ago
0
fix & extend 3' UTR annotation
#50
mschilli87
closed
8 years ago
0
discretization of bioanalyzer needs debugging
#49
nukappa
closed
8 years ago
3
code works when no pAi are present
#48
nukappa
closed
8 years ago
0
code works when no pAi are present
#47
nukappa
closed
8 years ago
0
add pAi infos in coverage ggplots
#46
nukappa
opened
8 years ago
0
3' UTR extension re-based on latest master
#45
mschilli87
closed
8 years ago
0
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