ramiromagno gwasrapidd issues

ramiromagno / gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

https://rmagno.eu/gwasrapidd/

Other

93 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[Error code 500] get_associations

#50 jyjo43043ver1 opened 1 month ago
1
[Error] response code was 500

#49 jyjo43043ver1 closed 1 month ago
3
to get a vairants list from GWAS catalog

#48 GGboy-Zzz closed 1 month ago
4
How download TSV file like on the web GWAS Catalog？or any function can do like that？

#47 sher-l closed 4 months ago
5
`get_studies()` not returning a scores object with efo id `"MONDO_0004648"`

#46 ramiromagno closed 11 months ago
0
FR: Add export functionality for gwasrapidd objects: `write_xlsx()`

#45 ramiromagno closed 11 months ago
0
How do I export `my_associations` to a table file, separated by tabs

#44 Zheng19w closed 1 year ago
8
The associations number obtained by "gwasrapidd" differs extremly from obtained in GWAS Catalog

#43 shenlan17 closed 1 year ago
4
Why are some gene names present in `genomic_contexts` but not in `ensembl_ids`?

#42 mzzclb closed 1 year ago
7
Problem with obtaining the RAF for individual variants contained within associations with a haplotype

#41 milcs40 closed 1 year ago
0
List of Variants to GWAS associations

#40 lizlitkowski closed 1 year ago
3
Error when running get_associations()

#39 mightyphil2000 closed 1 year ago
4
About failing download the studies of "get_studies()“

#38 huyou0916 closed 1 year ago
6
Fix for dev purrr

#37 hadley closed 1 year ago
1
Response code was 500.

#36 james-cranley closed 2 years ago
3
Error: parse error: premature EOF in study responses

#35 ramiromagno closed 2 years ago
0
consider transitioning to the (not so) new pkgdown website template

#34 ramiromagno closed 2 years ago
2
revisit FAQ 5

#33 ramiromagno opened 2 years ago
1
institutional logo not rendered in footer

#32 ramiromagno closed 2 years ago
0
The most efficient way to retrieve association results by study_id?

#31 totajuliusd closed 2 years ago
2
GRASP: Genome-Wide Repository of Associations Between SNPs and Phenotypes

#30 Shicheng-Guo closed 2 years ago
4
Gwascatcollect<-function(gene, chr=xx, start=xx, end=xx)

#29 Shicheng-Guo closed 2 years ago
3
parsing issue while using get_variants()

#28 peranti closed 3 years ago
9
Fix class-associations.R

#27 peranti closed 3 years ago
0
Fix assocaitions-class.Rd

#26 peranti closed 3 years ago
2
Response code 500 when using get_studies()

#25 mightyphil2000 closed 2 years ago
8
Is it possible to add additional gene information?

#24 peranti closed 3 years ago
4
Extract other information using gwasrapidd

#23 jiyue1214 closed 3 years ago
1
NCBI build conversion

#22 jinjinzhou closed 3 years ago
8
Retrieve all genetic associations searching on reported trait and efo simultaneously

#21 mightyphil2000 closed 3 years ago
7
discrepancies between get_variant and get_association

#20 mightyphil2000 closed 3 years ago
10
get_associations using reported trait

#19 mightyphil2000 closed 3 years ago
7
Very Small P Values are Rounded to 0

#18 MattCloward closed 3 years ago
2
Make functions that search by either `efo_trait` or `reported_trait` case sensitive again

#17 ramiromagno closed 3 years ago
0
Unexpected error in get_variants_by_efo_id: Error: length(efo_trait) not greater than 0

#16 ramiromagno closed 3 years ago
0
Fix documentation of `cytogenetic_bands`

#15 ramiromagno closed 3 years ago
0
Update documentation of `exists_variant()`

#14 ramiromagno closed 3 years ago
0
Error in get_studies

#13 alexb-84 closed 3 years ago
5
Problems with ensembl_id

#12 abhiachoudhary closed 3 years ago
15
How to get non-unioned results when using a list as a parameter?

#11 MattCloward closed 4 years ago
5
Link association_id, study_id and ancestry_id

#10 mightyphil2000 closed 3 years ago
7
Regular expression in function is_study_id no longer works for newest studies

#9 MattCloward closed 4 years ago
3
Functions for identifier mapping needed

#8 ramiromagno closed 3 years ago
0
Error in as.vector(x) : no method for coercing this S4 class to a vector

#7 ramiromagno opened 4 years ago
0
"get_variants" query error

#6 tzup closed 4 years ago
5
Bug in example

#5 jennysjaarda closed 4 years ago
6
`cols` is now required. Please use `cols

#4 ramiromagno closed 5 years ago
0
Refactor parsing functions to use `purrr::pluck()`

#3 ramiromagno opened 5 years ago
1
Hyperlink DOIs to preferred resolver

#2 katrinleinweber closed 5 years ago
2
get_snp_by_id and get_snp_by_location not working for rs35252396 and rs6470588

#1 ramiromagno closed 6 years ago
1