raphael-group chisel issues

raphael-group / chisel

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

BSD 3-Clause "New" or "Revised" License

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issues

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abnormal chr2q baf

#38 robinycfang closed 1 month ago
4
Other species

#37 benhedan closed 1 month ago
1
BAF calculation error

#36 xikanfeng2 closed 4 months ago
0
ZeroDivisionError in the nonnormal mode

#35 kzb193 opened 7 months ago
1
Targeted scDNAseq

#34 EspressoKris opened 8 months ago
0
Error with chisel_prep

#33 wmyuan37 opened 8 months ago
0
Error with chisel_nonormal

#32 parth2608 opened 10 months ago
2
chisel_prep

#31 pulimeng opened 11 months ago
6
Error while plotting!

#30 jmfa closed 10 months ago
1
Questions about single-cell barcoded BAM, PREFIX and the "CB:Z:" tag

#29 zhaoxiaofei closed 10 months ago
1
Using phased SNPs with chisel_nonormal

#28 jberg1999 closed 1 year ago
1
Doesn't work with hg38 reference genome

#27 aboffelli closed 1 year ago
5
GH action tests not passing due to missing python cache

#26 simozacca opened 2 years ago
0
Noisy RDR and CN calls

#25 yifnzhao closed 2 years ago
4
Question about VCF file

#24 Romeo1-1 closed 10 months ago
1
Fix phasing errors

#23 simozacca closed 2 years ago
0
Add nonormal command and required GC content and nonormal functionali…

#22 simozacca closed 2 years ago
0
Docs

#21 vineetbansal opened 3 years ago
0
another: AssertionError: There is a bin with a BAF shift > 0.5, likely BAF was not mirrored between 0 and 0.5

#20 rLannes closed 3 years ago
2
Failed to read from standard input in Counting phased SNPs in matched normal

#19 Rongtingting closed 3 years ago
4
Minor restructuring/tests/GH Actions integration

#18 vineetbansal closed 3 years ago
0
TypeError: unhashable type: 'dict'

#17 ljwharbers closed 3 years ago
2
No return in Call.py and AssertionError: There is a bin with a BAF shift > 0.5, likely BAF was not mirrored between 0 and 0.5

#16 Rongtingting closed 4 years ago
5
-r option in chisel_cloning isn't recognized

#15 marialitovchenko closed 3 years ago
2
pseudo matched-normal

#14 yifnzhao closed 4 years ago
14
Empty baf.tsv

#13 marialitovchenko closed 4 years ago
2
AssertionError: There is a bin with a BAF shift > 0.5, likely BAF was not mirrored between 0 and 0.5

#12 markutz556 closed 4 years ago
8
taskset not found

#11 pedrofale closed 4 years ago
1
Starting from a cell-by-bin read count matrix

#10 pedrofale closed 4 years ago
3
Standard single-cell DNA-seq data

#9 tamaraprieto closed 4 years ago
17
Lacking column names in intermediate files

#8 ivanov-v-v closed 4 years ago
2
Assertions without error messages

#7 ivanov-v-v closed 4 years ago
2
BAFs don't seem to agree with CNAs

#6 ivanov-v-v closed 4 years ago
2
Improvement suggestions for figures

#5 ivanov-v-v closed 4 years ago
4
Hardcoded list of chromosomes

#4 ivanov-v-v closed 4 years ago
2
How to form pseudo match-normal sample?

#3 ivanov-v-v closed 4 years ago
3
Python3.x support

#2 evanbiederstedt closed 4 years ago
3
CHISEL failing on Combiner.py ?

#1 laurenhummel closed 5 years ago
3