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ratschlab
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metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
http://metagraph.ethz.ch
GNU General Public License v3.0
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Annotating monochromatic contigs for SSHash graphs
#500
hmusta
opened
12 hours ago
0
Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows
#499
dependabot[bot]
opened
4 weeks ago
0
Merge master into sshash_module_superkmer_anno
#498
adamant-pwn
closed
2 months ago
0
Sshash module superkmer anno
#497
adamant-pwn
opened
2 months ago
1
Memory Requirements for Build
#496
bcantarel
opened
2 months ago
9
(doc inconsistency) Convert annotation to RowDiff<Multi-BRWT>
#495
shenwei356
opened
2 months ago
0
Merge master to sshash_module
#494
adamant-pwn
closed
3 months ago
0
Merge master in rowdiff
#493
adamant-pwn
closed
3 months ago
0
Merge master in rowdiff
#492
adamant-pwn
closed
3 months ago
0
Update htslib (#490)
#491
adamant-pwn
closed
3 months ago
0
Update htslib
#490
adamant-pwn
closed
3 months ago
0
Place all relevant headers in /include during installation
#489
adamant-pwn
opened
3 months ago
5
Fix a bunch of compilation errors
#488
adamant-pwn
closed
3 months ago
1
Count-based differential assembly
#487
hmusta
opened
3 months ago
0
Docker issue: No version information available: libhts.so.3:
#486
bbowles1
opened
4 months ago
4
c++ usage as a library
#485
feeka
opened
4 months ago
15
Implement RowDiff in DeBruijnGraph class
#484
adamant-pwn
opened
4 months ago
1
Annotate update coordinates
#483
Glfrey
opened
4 months ago
2
Fix CI failures for MacOS
#482
adamant-pwn
closed
4 months ago
1
Using SSHash submodule for graph representation
#481
mmarzett
closed
2 months ago
3
Annotating "N's"
#480
Glfrey
opened
9 months ago
0
Add SSHash-based representation
#479
adamant-pwn
closed
6 months ago
1
Merge map_to_nodes_sequentially declarations
#478
adamant-pwn
closed
10 months ago
0
Bump pip from 21.1 to 23.3 in /metagraph/api/python
#477
dependabot[bot]
closed
10 months ago
0
editing fastq header lines changes coordinate indexing
#476
matt-shenton
closed
11 months ago
3
Try to copy system-wide pip config to test_venv
#475
adamant-pwn
closed
11 months ago
0
minor doc fixes
#474
hmusta
closed
11 months ago
0
Memory management
#473
Glfrey
opened
12 months ago
1
metagraph installation failing
#472
carlaperezmon
closed
1 year ago
2
Cannot install phyton API
#471
carlaperezmon
closed
1 year ago
1
Can not reproduce results from paper
#470
MitraDarja
closed
1 year ago
4
metagraph align command results
#469
qbdong122
opened
1 year ago
1
slice_rows without reallocations
#468
karasikov
closed
11 months ago
2
Add missing headers to `binary_matrix.hpp`
#467
rob-p
closed
1 year ago
1
How to solve [error] Count vectors have different size?
#466
MitraDarja
closed
1 year ago
12
"lsof: WARNING: can't stat() tracefs file system /sys/kernel/debug/tracing" using metagraph build
#465
matt-shenton
closed
1 year ago
2
remove obsolete bin_rel_wt
#464
karasikov
closed
1 year ago
0
Transform does not create "kmer_counts.gz"-file
#463
MitraDarja
closed
1 year ago
4
Memory use annotating with coordinates
#462
matt-shenton
closed
1 year ago
1
refactoring and optimizations in annotations
#461
karasikov
closed
1 year ago
0
Alignment output
#460
Glfrey
closed
1 year ago
1
Indexing all metagenomes
#459
snayfach
opened
1 year ago
0
update repos before starting CI workflow
#458
hmusta
closed
1 year ago
0
fix the flag for subsampling in clustering for multi-brwt
#457
karasikov
closed
1 year ago
1
use large batch size in transform_anno by default, retry on failed CI
#456
karasikov
closed
1 year ago
0
Minor fixes
#455
hmusta
closed
1 year ago
0
deprecate adj-rc index, optimize and fix alignment to CanonicalDBG
#454
karasikov
closed
1 year ago
0
Less stringent alignment and seed filtering
#453
hmusta
opened
1 year ago
0
Relabeling annotations
#452
dcdanko
closed
1 year ago
1
faster query of RowDiff-compressed annotations
#451
karasikov
closed
1 year ago
0
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