issues
search
rcavalcante
/
annotatr
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
26
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
How can I do my custom annotation ? Please include rn7
#61
BenjaminDEMAILLE
opened
1 month ago
0
duplicate row.names: while reading G ranges as dataframe
#60
sachingadakh
closed
3 months ago
2
Mismatch between transcripts and genes
#59
javiercguard
opened
6 months ago
1
Error in build_annotations in mm10 : : Error in download.file (url, destfile, quiet = TRUE)
#58
GitR-Bio
closed
3 months ago
8
not available for rn7
#57
ChuanJ
opened
8 months ago
3
Error in build_annotations() for mm10_cpgs
#56
elderelizabeth
closed
3 months ago
3
Adjust 0-base coordinates from UCSC database downloads
#55
ryancey1
opened
11 months ago
0
CpG island annotations for `hg38`, `mm10`, `rn6`, and `galGal5` are 0-based instead of 1-based
#54
ryancey1
opened
11 months ago
0
How to label individual genes of a plot_numerical ()
#53
GitR-Bio
closed
3 months ago
1
A large number of regions are missing without annotations.
#52
jingydz
closed
3 months ago
2
Txdb-package for build.annotation
#51
dietmar113
opened
1 year ago
0
Annotate from GTF
#50
hennion
closed
3 months ago
3
No access to FANTOM
#49
jffpviana
closed
1 year ago
5
lncRNA link not working
#48
AlejRSosa
closed
3 months ago
3
hg38 CGI annotation
#47
magdadrozdz
closed
2 years ago
1
Where do the annotations come from?
#46
ahdee
closed
2 years ago
2
Unable to build annotations for hg38 cpg islands thought listed in builtin_annotations()
#45
5mec
closed
2 years ago
3
Problem building lncrna annotations
#44
RohanDugdale
closed
3 years ago
7
Problem with obtaining certain annotations
#43
jakalssj3
closed
3 years ago
10
failed to load resource
#42
mbassalbioinformatics
closed
3 years ago
2
Request for example of Chromatin states analysis for hg38 using Annotatr
#41
Rohit-Satyam
closed
3 years ago
5
What is the source of annotation data and can it be modified?
#40
jpcartailler
closed
2 years ago
1
how can I change the annotation files in the annotatr_cache
#39
Lucyyang1991
closed
4 years ago
2
build_annotations() error "argument to 'which' is not logical'
#38
wkc1986
closed
4 years ago
5
Link island/shore/shelf IDs
#37
rcavalcante
opened
4 years ago
0
No inbuilt function to calculate percentage Overlap
#36
Rohit-Satyam
closed
4 years ago
1
Use AnnotationHub accession directly in lncRNA cases
#35
rcavalcante
closed
2 years ago
4
columns in plot_numerical
#34
gabyrech
closed
4 years ago
7
read_regions does not work for "general" format .txt files
#33
clersdom
closed
2 years ago
1
Refactor build annotation code
#32
rcavalcante
opened
4 years ago
1
Annotation for Arabidopsis thaliana ?
#31
benoitballester
opened
4 years ago
4
Add dm6 CpG islands
#30
rcavalcante
opened
4 years ago
0
Annotations for just the main isoform of a gene?
#29
ben-laufer
closed
3 months ago
3
hg19_cpgs negative width for inter-CGI
#28
mtanic
closed
4 years ago
4
Document rtracklayer::import adding 1 to start of GRanges
#27
rcavalcante
opened
4 years ago
0
Genome prefix must be the same for custom annotation
#26
clersdom
closed
4 years ago
7
Randomizing Regions
#25
clersdom
closed
4 years ago
2
Build custom annotation for bovine genome
#24
Surajuvm
closed
4 years ago
15
Add support for danRer11
#23
rcavalcante
closed
5 years ago
1
Build a plot function similar to the bar plot for Orochi_bs.
#22
rcavalcante
opened
5 years ago
0
Add support for danRer11
#21
rcavalcante
opened
5 years ago
0
some functions were not found
#20
noemieblahic
closed
4 years ago
1
Remove `randomize_regions()` function
#19
rcavalcante
opened
5 years ago
0
Failing to check with dplyr 0.8.0 release candidate
#18
romainfrancois
closed
4 years ago
0
lncrna ftp link not working?
#17
beausjo
closed
2 years ago
10
Clarify warning message for `subset_order_tbl()`
#16
rcavalcante
opened
5 years ago
0
Is it possible to calculate distance to nearest gene using annotatr?
#15
bishwaG
closed
5 years ago
1
Error in build_annotations
#14
taloron
closed
6 years ago
1
annotation name for enhancers
#13
divy-kangeyan
closed
6 years ago
2
More informative error messages in build_gene_annots
#12
kdkorthauer
closed
6 years ago
2
Next