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reactome
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ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
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R Client for Ribo Seq data
#87
alexgrent
opened
1 day ago
0
How to solve this "sparse->dense coercion: allocating vector of size 17.3 GiB"
#85
XjtuZhangKun-lab
opened
1 week ago
0
sparse->dense coercion: allocating vector of size 17.3 GiB
#84
XjtuZhangKun-lab
opened
1 week ago
0
81 pseudo bulk
#82
alexgrent
opened
2 months ago
10
Add scRNA seq using pseudo bulk
#81
alexgrent
opened
2 months ago
0
Prepare for upcoming Seurat v5 release
#80
Gesmira
opened
11 months ago
0
ssGSEA FDR?
#79
domi84
opened
1 year ago
3
plot_gsva_pathway label squished and how to assign specific color
#78
camilla0801
opened
1 year ago
1
How can I save the heatmap from `plot_gsva_heatmap` with `ggplot2` ?
#77
camilla0801
closed
1 year ago
2
convert_reactome_result function not found
#76
nearvh
closed
1 year ago
1
ReactomeGSA API not working?
#75
quyaingo
closed
1 year ago
6
Obtaining features from `perform_reactome_analysis` function
#74
ejc043
closed
1 year ago
3
Create function for cluster-level pathway enrichment for scRNA-seq data
#73
jgriss
opened
1 year ago
0
Statistical significance from single-cell cluster analysis
#72
LuciaJim
closed
1 year ago
6
Pathway analysis on Spatial data 10x Visium
#71
cathalgking
closed
1 year ago
3
Lazy database
#69
querques
closed
1 year ago
1
Can we integrate Lipidomics, Metabolomics with RNA-seq, proteomics with ReactomeGSA？
#68
Shicheng-Guo
closed
1 year ago
1
Add support for group-wise comparison of scRNA-seq data
#67
jgriss
opened
1 year ago
0
perform_reactome_analysis does'nt create a reactome visualization
#66
SimonBedenbender
closed
2 years ago
2
use the latest Reactome release
#65
jlduan
closed
2 years ago
1
Potential bug: Ensure that groups can also be integers
#64
jgriss
opened
2 years ago
0
Selected Pathways
#63
brookeabrown
closed
1 year ago
1
Convert http to https in report download urls
#59
cqgong
closed
2 years ago
1
Request failed (503 - Service Unavailable)
#58
Luq16
closed
2 years ago
1
the API of gsa.reactome not work for analyse_sc_clusters
#55
xflicsu
closed
2 years ago
4
Use consistent FDR thresholds to define significantly regulated pathways
#54
jgriss
closed
2 years ago
1
Add number of mapped genes in GSVA results
#53
jgriss
opened
2 years ago
0
pathway hierarchy for annotating pathways
#48
bravedu01
opened
2 years ago
3
The plot_gsva_heatmap function make a wrong plot with a reversed trend.
#47
bravedu01
closed
2 years ago
3
Error in plot_gsva_pca(gsva_pbmc) : object 'gsva_result' not found
#46
bravedu01
closed
2 years ago
8
Request failed (503 - Service Unavailable): Failed to connect to storage system
#45
Ankita-1211
closed
2 years ago
5
Error: Failed to connect to ReactomeGSA
#44
Ankita-1211
closed
2 years ago
2
Check that passed metadata fits expression values in add_dataset
#43
jgriss
opened
2 years ago
0
Running reactomeGSA on multiple resolution cluster separately
#41
Ankita-1211
closed
2 years ago
0
Request Failed -- 503 -- Service Unavailable -- Is Reactome API down?
#38
hcchau418
closed
2 years ago
2
Running reactomeGSA for species other than human
#36
Ankita-1211
closed
3 years ago
0
Error: Only one identification found: 'RNA_snn_res.0.6
#34
Ankita-1211
closed
3 years ago
1
heatmap labels of the cells clusters are squished
#32
jjyotikataria
closed
3 years ago
0
reproducibility of the ReactomeGSA
#28
FADHLyemen
closed
3 years ago
4
Error: Failed to connect to ReactomeGSA
#27
FADHLyemen
closed
3 years ago
1
Not getting cluster names in the dataframe after pathway expression
#26
jjyotikataria
closed
3 years ago
1
where to find start_reactome_analysis?
#25
FADHLyemen
closed
3 years ago
3
scRNA-seq pathway scoring per condition
#24
FADHLyemen
closed
3 years ago
7
Make mapping results (entities per pathway) available in R
#23
jgriss
opened
3 years ago
0
How to automatically download table displayed in reactome link
#22
lireo
closed
3 years ago
5
Error at too many cells – Cholmod error 'problem too large'
#21
vertesy
closed
3 years ago
2
Typo in tutorial
#20
vertesy
closed
3 years ago
1
How to label the points on the graph itself using plot_gsva_pca()?
#19
levinhein
closed
3 years ago
1
Error with curl HTTP access
#18
maraddatz
closed
3 years ago
3
analyse_sc_clusters with the "Error in readBin(3L, raw(0), 32768L) : "
#17
Charlesyip2016
closed
3 years ago
1
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