reactome ReactomeGSA issues

reactome / ReactomeGSA

R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

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Timeout was reached: [gsa.reactome.org] SSL/TLS connection timeout

#89 cdkodira opened 1 month ago
1
87 ribo seq

#88 Gionmattia opened 2 months ago
0
R Client for Ribo Seq data

#87 alexgrent opened 2 months ago
0
How to solve this "sparse->dense coercion: allocating vector of size 17.3 GiB"

#85 XjtuZhangKun-lab opened 3 months ago
0
sparse->dense coercion: allocating vector of size 17.3 GiB

#84 XjtuZhangKun-lab opened 3 months ago
0
81 pseudo bulk

#82 alexgrent closed 3 weeks ago
10
Add scRNA seq using pseudo bulk

#81 alexgrent opened 5 months ago
0
Prepare for upcoming Seurat v5 release

#80 Gesmira opened 1 year ago
0
ssGSEA FDR?

#79 domi84 opened 1 year ago
3
plot_gsva_pathway label squished and how to assign specific color

#78 camilla0801 opened 1 year ago
1
How can I save the heatmap from `plot_gsva_heatmap` with `ggplot2` ?

#77 camilla0801 closed 1 year ago
2
convert_reactome_result function not found

#76 nearvh closed 1 year ago
1
ReactomeGSA API not working?

#75 quyaingo closed 1 year ago
6
Obtaining features from `perform_reactome_analysis` function

#74 ejc043 closed 1 year ago
3
Create function for cluster-level pathway enrichment for scRNA-seq data

#73 jgriss opened 1 year ago
0
Statistical significance from single-cell cluster analysis

#72 LuciaJim closed 1 year ago
6
Pathway analysis on Spatial data 10x Visium

#71 cathalgking closed 1 year ago
3
Lazy database

#69 querques closed 1 year ago
1
Can we integrate Lipidomics, Metabolomics with RNA-seq, proteomics with ReactomeGSA？

#68 Shicheng-Guo closed 2 years ago
1
Add support for group-wise comparison of scRNA-seq data

#67 jgriss opened 2 years ago
0
perform_reactome_analysis does'nt create a reactome visualization

#66 SimonBedenbender closed 2 years ago
2
use the latest Reactome release

#65 jlduan closed 2 years ago
1
Potential bug: Ensure that groups can also be integers

#64 jgriss opened 2 years ago
0
Selected Pathways

#63 brookeabrown closed 1 year ago
1
Convert http to https in report download urls

#59 cqgong closed 2 years ago
1
Request failed (503 - Service Unavailable)

#58 Luq16 closed 2 years ago
1
the API of gsa.reactome not work for analyse_sc_clusters

#55 xflicsu closed 2 years ago
4
Use consistent FDR thresholds to define significantly regulated pathways

#54 jgriss closed 3 years ago
1
Add number of mapped genes in GSVA results

#53 jgriss opened 3 years ago
0
pathway hierarchy for annotating pathways

#48 bravedu01 opened 3 years ago
3
The plot_gsva_heatmap function make a wrong plot with a reversed trend.

#47 bravedu01 closed 3 years ago
3
Error in plot_gsva_pca(gsva_pbmc) : object 'gsva_result' not found

#46 bravedu01 closed 3 years ago
8
Request failed (503 - Service Unavailable): Failed to connect to storage system

#45 Ankita-1211 closed 3 years ago
5
Error: Failed to connect to ReactomeGSA

#44 Ankita-1211 closed 3 years ago
2
Check that passed metadata fits expression values in add_dataset

#43 jgriss opened 3 years ago
0
Running reactomeGSA on multiple resolution cluster separately

#41 Ankita-1211 closed 3 years ago
0
Request Failed -- 503 -- Service Unavailable -- Is Reactome API down?

#38 hcchau418 closed 3 years ago
2
Running reactomeGSA for species other than human

#36 Ankita-1211 closed 3 years ago
0
Error: Only one identification found: 'RNA_snn_res.0.6

#34 Ankita-1211 closed 3 years ago
1
heatmap labels of the cells clusters are squished

#32 jjyotikataria closed 3 years ago
0
reproducibility of the ReactomeGSA

#28 FADHLyemen closed 3 years ago
4
Error: Failed to connect to ReactomeGSA

#27 FADHLyemen closed 3 years ago
1
Not getting cluster names in the dataframe after pathway expression

#26 jjyotikataria closed 3 years ago
1
where to find start_reactome_analysis?

#25 FADHLyemen closed 3 years ago
3
scRNA-seq pathway scoring per condition

#24 FADHLyemen closed 3 years ago
7
Make mapping results (entities per pathway) available in R

#23 jgriss opened 3 years ago
0
How to automatically download table displayed in reactome link

#22 lireo closed 3 years ago
5
Error at too many cells – Cholmod error 'problem too large'

#21 vertesy closed 3 years ago
2
Typo in tutorial

#20 vertesy closed 3 years ago
1
How to label the points on the graph itself using plot_gsva_pca()?

#19 levinhein closed 3 years ago
1