reconstrue single_cell issues

reconstrue / single_cell

Single cell analysis tools built to run on Jupyter, especially Colab

http://reconstrue.com

Apache License 2.0

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issues

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Serverless

#87 JohnTigue opened 3 years ago
0
tSNE tuning with TF.js

#86 JohnTigue opened 4 years ago
0
TMAP

#85 JohnTigue opened 4 years ago
0
Why is the Allen pimping a tSNE and not a UMAP?

#84 JohnTigue opened 4 years ago
0
Add Open-in-Colab bagdes into .ipynb and Readme.md

#83 JohnTigue opened 4 years ago
0
Set repos social media cover image

#82 JohnTigue opened 4 years ago
0
The tools directory needs a Readme.md

#81 JohnTigue opened 4 years ago
0
Dismay: calculation of distance metrics for matrices

#80 JohnTigue opened 4 years ago
0
Cytosplore

#79 JohnTigue opened 4 years ago
0
Separate Embedder UI from Embedder Engine

#78 JohnTigue opened 4 years ago
0
Manifest JSON should be Starfish based

#77 JohnTigue opened 4 years ago
0
Pezzotti Focus&Context UX can be cast as UMAP custom distance function

#76 JohnTigue opened 4 years ago
1
Progressive is useful for visual analytics and checkpoints

#75 JohnTigue opened 4 years ago
0
Reduce down to 1D tSNE/UMAP. Map linearly to rainbow. Then plot 2D w/ 1D's colors

#74 JohnTigue opened 4 years ago
0
Repro Rapids tSNE perf test

#73 JohnTigue opened 4 years ago
0
nptsne: test on Colab

#72 JohnTigue opened 4 years ago
1
Repro AIBS Transcriptomic Explorer

#71 JohnTigue opened 4 years ago
0
Datashader for downsampling images

#70 JohnTigue closed 4 years ago
1
PCA to few components on server GPU; client does tfjs-tsne

#69 JohnTigue opened 4 years ago
0
bayNorm is GPL R code

#68 JohnTigue opened 4 years ago
0
Starfish Issues

#67 JohnTigue opened 4 years ago
0
Single Cell Representation Learning (SCRL)

#66 JohnTigue opened 4 years ago
0
Data wrangling: Market Exchange Format (MEX)

#65 JohnTigue opened 4 years ago
0
UMAP for rare cell type detection

#64 JohnTigue opened 4 years ago
0
scPhere

#63 JohnTigue opened 4 years ago
1
Readme.md

#62 JohnTigue closed 4 years ago
0
Datashader interactivity

#61 JohnTigue opened 4 years ago
4
Outlier detection

#60 JohnTigue opened 4 years ago
0
Optimize Rapids install

#59 JohnTigue opened 4 years ago
0
cuDatashader

#58 JohnTigue opened 4 years ago
0
Repro paper: DR viz SC via UMAP (Becht, McInnes, et alia 2018)

#57 JohnTigue opened 4 years ago
1
UMAP: custom distance

#56 JohnTigue opened 4 years ago
0
three.js for UMAP viz

#55 JohnTigue opened 4 years ago
0
UNCURL: preprocessing via sampling aware Non-neg matrix facotrization

#54 JohnTigue opened 4 years ago
0
Top 3 PC of PCA => RGB

#53 JohnTigue opened 4 years ago
0
Autoencoder as replacement for PCA (Tensorflow, Keras)

#52 JohnTigue opened 4 years ago
0
UMAP: animate progress

#51 JohnTigue opened 4 years ago
0
sctransform

#50 JohnTigue opened 4 years ago
0
Stock Colab UMAP

#49 JohnTigue opened 4 years ago
1
oocPCA is MKL-based out-of-core PCA

#48 JohnTigue opened 4 years ago
0
Load CSV via Rapids cuDF

#47 JohnTigue opened 4 years ago
0
[Unfriendly] Sleepwalk

#46 JohnTigue opened 4 years ago
0
DESC: Deep Embedding for Single-cell Clustering

#45 JohnTigue opened 4 years ago
0
Dataset: MOCA from Fred Hutch

#44 JohnTigue opened 4 years ago
0
Dataset: Tabula Muris

#43 JohnTigue opened 4 years ago
0
Data wrangling: RDS => not R specific format

#42 JohnTigue opened 4 years ago
1
Tensorboard on Colab

#41 JohnTigue opened 4 years ago
0
Rapids+Jupyter+T4 on AWS

#40 JohnTigue opened 4 years ago
0
Scatter plotting

#39 JohnTigue opened 4 years ago
1
Dendograms

#38 JohnTigue opened 4 years ago
1