refgenie refgenconf issues

refgenie / refgenconf

A Python object for standardized reference genome assets.

http://refgenie.databio.org

BSD 2-Clause "Simplified" License

3 stars 6 forks source link

issues

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why would get_asset return a relative to pwd path?

#44 nsheff closed 5 years ago
3
python2 error

#43 nsheff closed 5 years ago
3
0.2.0

#42 vreuter closed 5 years ago
1
sort results of `list` and `listr`

#41 nsheff closed 5 years ago
15
Checking asset path relative to genome and main genome folder

#40 vreuter closed 5 years ago
0
imprecise message when pulling non-existent asset/genome pair

#39 stolarczyk closed 5 years ago
7
behavior in get_asset for optional asset?

#38 jpsmith5 closed 5 years ago
2
0.1.2

#37 vreuter closed 5 years ago
0
refgenie clobbers existing assets

#36 nsheff closed 5 years ago
3
make py2-compatible

#35 nsheff closed 5 years ago
0
missing requirements

#34 nsheff closed 5 years ago
2
Pass tests; close #31; close #32

#33 vreuter closed 5 years ago
0
archive_data fetch as a "request validation" step

#32 stolarczyk closed 5 years ago
0
Asset pull tests are broken

#31 vreuter closed 5 years ago
2
Dev

#30 vreuter closed 5 years ago
3
Pointing to assets?

#28 jpsmith5 closed 5 years ago
27
ValueError: To create config object, string should be config filepath; got 'genome_config.yaml'

#27 nsheff closed 5 years ago
6
minimum version

#26 nsheff closed 5 years ago
3
adding genome attributes to config file

#25 nsheff closed 5 years ago
8
0.1.0

#23 vreuter closed 5 years ago
1
account for the interrupted pulls

#22 stolarczyk closed 5 years ago
8
No genome_folder

#21 vreuter closed 5 years ago
5
empty RefGenConf evaluates as True

#20 vreuter closed 5 years ago
1
Dev

#19 vreuter closed 5 years ago
2
check for env var existence in genome_path

#18 stolarczyk closed 5 years ago
2
bump required ubiquerg version

#17 stolarczyk closed 5 years ago
0
Imports in main module

#16 vreuter closed 5 years ago
7
Include pull asset helpers

#15 vreuter closed 5 years ago
0
Dev

#14 vreuter closed 5 years ago
4
Pull asset

#13 vreuter closed 5 years ago
0
add pull asset functionality

#12 nsheff closed 5 years ago
1
add list remote assets functionality from CLI

#11 nsheff closed 5 years ago
0
rename object to RefGenConf?

#10 nsheff closed 5 years ago
2
check for untar

#9 nsheff closed 5 years ago
0
Extras for especially common assets

#8 vreuter closed 5 years ago
2
list genomes by asset

#7 nsheff closed 5 years ago
5
use openapi.json for standardizing interface to refgenie server

#64 nsheff closed 5 years ago
0
converting pepatac to use refgenconf

#6 nsheff closed 5 years ago
0
No admin

#5 vreuter closed 5 years ago
1
dep bump

#4 vreuter closed 5 years ago
1
eliminate PathExAttMap

#3 nsheff closed 5 years ago
0
pull out yaml helpers

#2 nsheff closed 5 years ago
1
A refgenie class

#1 nsheff closed 5 years ago
0