issues
search
refgenie
/
refgenconf
A Python object for standardized reference genome assets.
http://refgenie.databio.org
BSD 2-Clause "Simplified" License
3
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add genome_description upon asset pull
#99
nsheff
closed
4 years ago
7
v0.9.0
#95
stolarczyk
closed
4 years ago
0
v0.8.0
#94
stolarczyk
closed
4 years ago
0
Adding values that aren't file paths
#93
nsheff
opened
4 years ago
1
Plugins
#92
nsheff
closed
4 years ago
8
Listing recipe requirements from within python
#91
nsheff
opened
4 years ago
2
malformed string error
#90
nsheff
closed
4 years ago
1
TypeError: tag must be str; got unicode
#89
nsheff
closed
4 years ago
1
v0.7.0
#88
stolarczyk
closed
4 years ago
3
Allow list_remote() to work with list of servers. Currently only returning values from first available URL.
#87
blankenberg
closed
4 years ago
4
mimic CLI terminology in RefGenConf object's methods
#86
stolarczyk
closed
4 years ago
1
list_local is returning strings
#84
nsheff
closed
4 years ago
2
Get a list of recipes within python
#83
nsheff
opened
4 years ago
4
get_asset terminology
#82
nsheff
closed
4 years ago
2
list_remote broken.
#81
nsheff
closed
4 years ago
3
v0.6.2
#80
stolarczyk
closed
4 years ago
0
v0.6.1
#79
stolarczyk
closed
4 years ago
0
v0.6.0
#78
stolarczyk
closed
4 years ago
0
updating config file in pull_asset
#77
nsheff
closed
4 years ago
3
error on slow downloads
#76
nsheff
closed
4 years ago
1
add a refgenie asset programmatically?
#75
jpsmith5
closed
4 years ago
10
v0.5.4
#74
stolarczyk
closed
4 years ago
0
colon is overloaded in tqdm progress bar description
#73
stolarczyk
closed
4 years ago
0
Deal with HTTPError error (missing archives on the server)
#71
stolarczyk
closed
4 years ago
0
chk_digest_update_child checks and writes asset relationship multiple times
#70
stolarczyk
closed
4 years ago
0
pull_asset changes RGC object attribute outside of __init__
#69
stolarczyk
closed
4 years ago
1
v0.5.3
#68
stolarczyk
closed
4 years ago
0
v0.5.2
#67
stolarczyk
closed
4 years ago
0
documentation updates
#66
nsheff
closed
4 years ago
0
Random Errors in output
#65
nsheff
closed
4 years ago
1
pulling an asset with parents should populate their asset_children
#63
nsheff
closed
4 years ago
0
empty dir produced after a negative answer to "large archive" question
#62
stolarczyk
closed
4 years ago
0
v0.5.0
#61
stolarczyk
closed
4 years ago
7
default seek keys
#60
nsheff
closed
5 years ago
6
create an empty RefGenConf object
#58
stolarczyk
closed
4 years ago
2
Genome checksums to dev
#57
stolarczyk
closed
4 years ago
0
bug in refgenie seek
#56
nsheff
closed
5 years ago
1
update unit tests
#55
stolarczyk
closed
5 years ago
0
add 'tag' to pull_asset
#54
nsheff
closed
5 years ago
3
`get_asset` will need a new optional arg, `tag`, which if set to None, returns the default asset.
#53
nsheff
closed
5 years ago
5
`update_assets(` will need a signature change to accommodate:
#52
nsheff
closed
5 years ago
2
add tag layer to the config format
#51
stolarczyk
closed
5 years ago
1
add setdefault method
#50
stolarczyk
closed
5 years ago
2
release 0.4.0
#49
nsheff
closed
5 years ago
1
Test fixes
#48
vreuter
closed
5 years ago
2
correct tests
#47
stolarczyk
closed
5 years ago
1
v0.3.0
#46
stolarczyk
closed
5 years ago
2
Dev
#45
vreuter
closed
5 years ago
0
why would get_asset return a relative to pwd path?
#44
nsheff
closed
5 years ago
3
python2 error
#43
nsheff
closed
5 years ago
3
Previous
Next