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FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
GNU General Public License v3.0
150
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25
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Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows
#49
dependabot[bot]
closed
2 months ago
1
Fix off-by-one error in `GappedSequence` constructor
#48
althonos
closed
2 months ago
1
Fix typo in include guards in `msa.cpp`
#47
althonos
closed
4 months ago
0
Segmentation fault due to `MSTPrim`
#46
althonos
closed
2 months ago
4
Git submodules for vendored libraries
#45
nathanweeks
closed
2 months ago
3
Question: how can we do profile alignment using FAMSA?
#44
PraljakReps
closed
6 months ago
0
Error at run time
#43
fabgonzal
opened
1 year ago
1
Request Clustal format output
#42
stubrown
opened
1 year ago
1
Famsa gets stuck
#41
bioinsilico
closed
4 months ago
1
make: *** [makefile:227: src/core/profile_par.o] Error 1 In Ubuntu 22
#40
fermza
opened
1 year ago
0
Reverse compliments
#39
jamesPet
opened
1 year ago
2
Fix error in "STATIC_LINK=true" section due to extra "-".
#38
davised
closed
4 months ago
0
Compile error when STATIC_LINK=true
#37
davised
closed
4 months ago
1
Low CPU usage?
#36
pmfawcett
closed
4 months ago
1
sequence paired identity large than 100%
#35
Chenglin20170390
closed
4 months ago
2
FAMSA hangs on identical sequences
#34
arvestad
closed
4 months ago
3
Fix wrong source filename in `makefile` when compiling for NEON platform
#33
althonos
closed
2 years ago
1
Inconsistent results between Linux and MacOS
#32
althonos
closed
4 months ago
5
compiling error on Apple M1 Pro
#31
jianshu93
closed
2 years ago
2
Added functionality to allow profile profile alignment
#30
sachdved
closed
2 years ago
5
Add a Gitter chat badge to README.md
#29
gitter-badger
closed
2 years ago
0
famsa will replace the amino acid U with X
#28
LTEnjoy
closed
2 years ago
0
famsa will replace the amino acid U with X
#27
LTEnjoy
closed
2 years ago
2
famsa as R package
#26
hprzegendza
closed
2 years ago
1
Fix a typo
#25
DarkoGNU
closed
2 years ago
0
Can I keep the sequences in output files have the same order as in input files?
#24
LTEnjoy
closed
2 years ago
3
Remove gaps automatically if the input is a MSA
#23
apcamargo
closed
2 years ago
5
Update lcsbp.cpp
#22
abiadak
closed
2 years ago
1
Update makefile
#21
abiadak
closed
2 years ago
1
GPU Support?
#20
smk508
closed
2 years ago
1
Fix Clang template parameter compile error
#19
milot-mirdita
closed
4 years ago
0
Trouble installing FAMSA
#18
000generic
closed
4 years ago
3
Sequence ordering in -dist_export
#17
maressyl
closed
4 years ago
4
Version 1.3.2: precompiled binaries for osx / compile on MacOS?
#16
JiaminShi
closed
3 years ago
3
Fix * char emitted for unknown residues, emits X instead
#15
milot-mirdita
closed
4 years ago
0
Add single entry fasta support
#14
martin-steinegger
closed
4 years ago
1
Failure of make
#13
THinnerichs
closed
5 years ago
4
How to install/compile on linux?
#12
bioteksampath
closed
4 years ago
2
Storing guide trees
#11
agudys
closed
5 years ago
0
Cannot "make" on OSX 10.13.4
#10
BrendanW-M
closed
5 years ago
6
Availability via conda
#9
jacodela
closed
4 years ago
5
segmentation fault using gpu version
#8
ivokwee
closed
6 years ago
11
A linux-static version of 1.2.2 would be greatly appreciated
#7
doomedramen
closed
6 years ago
2
Instructions for installation
#6
ekiefl
closed
6 years ago
4
Reading from STDIN, reporting to STDOUT
#5
meren
closed
7 years ago
3
Unable to install on local cluster
#4
rohitarora10
closed
6 years ago
4
AVX2 required?
#3
jeremylp2
closed
5 years ago
5
make fails on Linux - 'align' was not declared in this scope
#2
dmgood11
closed
7 years ago
2
Failure to install on Mac OS X Sierra 10.12.2 (16C68)
#1
rarnaout
closed
7 years ago
1