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poreCov
SARS-CoV-2 workflow for nanopore sequence data
https://case-group.github.io/
GNU General Public License v3.0
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rki conform metadata output
#27
replikation
closed
3 years ago
2
allow input of a "raw basecalled fastq" dir
#26
replikation
closed
3 years ago
1
Update help-message
#25
DataSpott
closed
3 years ago
0
Singularity containers needed for GPU and CPU Guppy
#24
hoelzer
closed
3 years ago
3
Change/Remove tree approach
#23
replikation
closed
3 years ago
0
€: invalid
#22
replikation
closed
3 years ago
1
Optimize CPU basecalling
#21
hoelzer
closed
3 years ago
0
Add CPU support for Guppy basecalling
#20
hoelzer
closed
3 years ago
3
Generate one summary consensus QC TSV
#19
hoelzer
closed
3 years ago
0
Dev replikation
#18
replikation
closed
3 years ago
7
output bam file from coverage mapping step
#17
hoelzer
closed
3 years ago
0
implemented seq ident consensus check
#16
hoelzer
closed
3 years ago
3
add nanoplot simple read qc
#15
hoelzer
closed
3 years ago
0
Output also the mapping files for QC
#14
hoelzer
closed
3 years ago
1
Output QC
#13
hoelzer
closed
3 years ago
1
Simple Read QC
#12
hoelzer
closed
3 years ago
2
ARTIC nextflow pipeline
#11
hoelzer
closed
3 years ago
0
report
#10
hoelzer
closed
3 years ago
8
report primerpairs for "N" regions
#9
replikation
closed
3 years ago
1
missing bases in low-covered homopolymer stretches
#8
hoelzer
closed
3 years ago
2
Suggestion: Including Medaka VCF output in results
#7
RaverJay
closed
3 years ago
2
add molecular clock to augur
#6
replikation
closed
3 years ago
1
Installation from source without conda/singularity/docker
#5
samfux84
closed
4 years ago
1
periscope inclusion
#4
replikation
closed
3 years ago
0
threads for guppy
#3
replikation
closed
3 years ago
1
change nextflow.config to correctly point to main script
#2
angelovangel
closed
4 years ago
1
add pangolin to workflow
#1
replikation
closed
4 years ago
1
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