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rezakj
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iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
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an error message - running the run.knetl
#37
MavroLucic
opened
8 months ago
1
data.scale question
#36
gianfilippo
opened
1 year ago
2
can not using the iCellR ni rstudio when the plot setting the interactive =T
#35
honghh2018
opened
1 year ago
0
gg.cor produces incorrect plots
#34
rohitrrj
opened
2 years ago
0
Seeking help to create different types of plots
#33
Rashidul1990
closed
2 years ago
3
no plots available for ADT data when using ADT + HTO
#32
m3lorra
opened
2 years ago
0
Transform my iCellR object into seurat？
#31
pteromysvolans
opened
2 years ago
1
'replacement has 1 row, data has 0' when creating iCellR object
#30
lucas-bishop
opened
3 years ago
3
How to normalize data with single condition?
#29
bioysu
opened
3 years ago
1
Method for gene-gene correlations
#28
Yale73
opened
3 years ago
2
Can I integrate data with iCellR?
#27
Midsummer723
closed
3 years ago
4
Transform my seurat object into iCellR
#26
pabloatria18
opened
3 years ago
5
VDJ analysis: can I use filtered.contig? Error when I run clono.plot
#25
france-hub
closed
3 years ago
3
conds.to.plot in gene.plot not functional
#24
joybarrett08
opened
3 years ago
0
Labelling cells with cluster
#23
nicholascwho
closed
4 years ago
4
TPM instead of count data & no conditions
#22
nicholascwho
closed
4 years ago
2
converting old iCellR object to new object
#21
joybarrett08
closed
4 years ago
1
Ploting colonotypes
#20
crushseven-7
closed
4 years ago
4
convert seurat object to iCellR object
#19
gt7901b
closed
4 years ago
3
Error: cannot allocate vector of size 6288.3 Gb
#18
jajcobyang
closed
4 years ago
1
pseudotime.tree
#17
Yale73
closed
4 years ago
2
Can not run the cluster.plot and the run.diff.exp
#16
Yale73
closed
4 years ago
5
Can not run findMarkers
#15
Yale73
closed
4 years ago
6
how to produce a coverage corrected matrix
#14
JLiLab
closed
4 years ago
2
load10x failed
#13
jajcobyang
closed
4 years ago
1
Memory management problem
#12
ehcw111
closed
4 years ago
2
VDJ data loading
#11
jsmoon4
closed
4 years ago
3
Minor proposal on line 09
#10
kant
closed
3 years ago
0
Minor fix on line 16
#9
kant
closed
3 years ago
0
Minor fixes on lines 384 & 427 & 633 & 1103
#8
kant
closed
3 years ago
0
qc.stats() missing value where TRUE/FALSE needed
#7
BioLaoXu
closed
4 years ago
1
Coloring not working for TSNE and UMAP plots for option color by = "Cluster"
#6
IkjotSidhu
closed
4 years ago
4
Mutual Nearest Neighbor Batch correction not working
#5
IkjotSidhu
closed
4 years ago
3
Possible to cluster based on ADT data alone?
#4
cpcook1
closed
4 years ago
1
iCellR object fails to function when using multiple samples with same condition
#3
IkjotSidhu
closed
5 years ago
3
data input from other object
#2
zehualilab
closed
4 years ago
5
could not generate interactive figures.
#1
weiliuyuan
closed
5 years ago
4