rg314 pytraction issues

rg314 / pytraction

Bayesian Traction Force Microscopy

BSD 3-Clause "New" or "Revised" License

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issues

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Major pytraction update in April 2024

#61 nik-liegroup opened 5 months ago
1
GoogleDriveDownloader Issue stops TractionForceConfig function from working properly

#60 jf767 closed 1 year ago
2
get_example_data.py downloads a file that is not unzippable

#59 jf767 opened 1 year ago
3
TractionForceConfig implementation is incompatible with scikit-learn v1.0 and above

#58 a19s opened 2 years ago
1
ERROR when Running pytraction locally via docker + pip install -e .

#57 a19s opened 2 years ago
0
In low contrast/underexposed images FiJi seems to detect forces more robustly

#56 l-kaplan opened 3 years ago
0
Small spots of high forces skew results

#55 l-kaplan opened 3 years ago
0
How to filter forces according to ROI

#54 l-kaplan opened 3 years ago
0
crop_aligned_slice is set to False

#53 rg314 closed 3 years ago
0
Updating pytraction to later versions

#52 rg314 opened 3 years ago
6
Iss44

#51 rg314 closed 3 years ago
0
MemoryError - Can't process 2048x2048 images

#50 l-kaplan opened 3 years ago
1
Update example3.ipynb

#49 l-kaplan closed 3 years ago
1
Update example2.ipynb

#48 l-kaplan closed 3 years ago
1
replace travis.ci with github actions

#47 rg314 closed 3 years ago
0
added custom noise functionality and reccusrive call when window size…

#46 rg314 closed 3 years ago
0
ImageJ plugin (Java) that links to python API

#45 rg314 opened 3 years ago
1
Edge artefact after align_slice()

#44 rg314 closed 3 years ago
7
Refactor

#43 rg314 closed 3 years ago
0
OpenPIV v0.23.5: piv updated from openpiv

#42 rg314 opened 3 years ago
0
Refactor

#41 rg314 closed 3 years ago
0
refactor codebase

#40 rg314 closed 3 years ago
0
Iss18

#39 rg314 closed 3 years ago
0
Contributing.md

#37 rg314 opened 3 years ago
0
Allow to use a time series as reference image

#36 a19s opened 3 years ago
0
thread process_stack(img, ref)

#35 rg314 opened 3 years ago
6
RuntimeWarning: Please ensure that the input image has shape (f,c,w,h) the current shape is (1088, 1590)

#34 rg314 opened 3 years ago
0
Usage video as per ZeroCostDL4Mic

#33 rg314 opened 3 years ago
0
Example data for multiple image stacks

#32 a19s opened 3 years ago
1
[experimental] Segmentation issue

#31 a19s opened 3 years ago
1
MemoryError: Unable to allocate 91.6 GiB for an array with shape (78408, 78408) and data type complex128

#30 a19s opened 3 years ago
11
FileNotFoundError: DLL with shapely

#29 rg314 opened 3 years ago
2
ComplexWarning and SparseEfficiencyWarning

#28 rg314 closed 3 years ago
0
example notebooks need updating

#27 rg314 closed 3 years ago
2
create examples notebook with different use case

#26 rg314 opened 3 years ago
2
Example stacks used in usage.ipynb should be smaller (fewer images per stack)

#25 a19s opened 3 years ago
3
"verbose" argument in TractionForce.process_stack() should be set to 1 (or True) to display processing log

#24 a19s closed 3 years ago
0
ZeroDivisionError: float division by zero

#23 rg314 opened 3 years ago
1
recursive roi

#22 rg314 opened 3 years ago
2
Roca-Cusachs TFM package

#21 rg314 opened 3 years ago
3
Simulation of ground truth

#20 rg314 opened 3 years ago
8
POC testing

#19 rg314 opened 3 years ago
11
improvements in saving output

#18 rg314 closed 3 years ago
0
added automatic detection of window size #15

#17 rg314 closed 3 years ago
1
documentation and tests missing from package

#16 rg314 opened 3 years ago
4
get_windows_size(self)

#15 rg314 closed 3 years ago
2
NaN result encountered. in fmin

#14 rg314 closed 3 years ago
3
The command "source scripts/get_example_data.sh" failed and exited with 1 during .

#13 rg314 closed 3 years ago
1
expand roi polygon by constant bleed

#12 rg314 opened 3 years ago
0
Specific use of cuda model not allowing cpu compute

#11 rg314 closed 3 years ago
2