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rhpvorderman
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sequali
Fast sequencing data quality metrics
GNU Affero General Public License v3.0
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Make plot ids reproducible
#183
rhpvorderman
closed
15 hours ago
0
Make HTML reports more reproducible.
#182
rhpvorderman
closed
15 hours ago
1
Add pre-commit ci
#181
rhpvorderman
closed
1 day ago
0
Simplified dispatch for sequence identity functions
#180
rhpvorderman
closed
2 days ago
1
Use clang-format and pre-commit
#179
rhpvorderman
closed
2 days ago
0
Simplify GC content percentage count.
#178
rhpvorderman
closed
1 week ago
0
Improve BAM nibble decoding and dispatch functions at load time.
#177
rhpvorderman
closed
1 week ago
0
Add FastQC-like "judgements" on the quality of the library
#176
rhpvorderman
opened
2 weeks ago
0
Switch prefetching to compiler builtins, so it works on all architectures.
#175
rhpvorderman
closed
4 weeks ago
0
"Solve" the insert size distribution in order to extrapolate the estimate.
#174
rhpvorderman
opened
1 month ago
2
Improve overrepresented sequence sampling so common genome repeats show up less.
#173
rhpvorderman
opened
1 month ago
0
Rewrite some sections of the code so that these do not require SSE2 intrinsics for speed.
#172
rhpvorderman
closed
1 month ago
0
Rewrite shift-AND algorithm to enable compiler auto vectorization when GCC 14.1 becomes available.
#171
rhpvorderman
opened
1 month ago
0
Release 0.10.0
#170
rhpvorderman
closed
1 month ago
0
Release 0.10.0
#169
rhpvorderman
closed
1 month ago
0
Make overrepresented table entries a fixed size table with scrolling.
#168
rhpvorderman
closed
1 month ago
0
Stage hashes to prevent in-sequence duplication to affect overrepresented sequences
#167
rhpvorderman
closed
1 month ago
0
Check if sequences occur multiple times in the same read.
#166
rhpvorderman
closed
1 month ago
2
Heed clang compile warnings.
#165
rhpvorderman
closed
1 month ago
0
Speed up sequence identity calculation by more than 10 times using AVX2 instructions
#164
rhpvorderman
closed
1 month ago
0
Calculate sequence identity using avx2 vectors
#163
rhpvorderman
closed
1 month ago
0
Release 0.9.1
#162
rhpvorderman
closed
1 month ago
0
Release 0.9.1
#161
rhpvorderman
closed
1 month ago
0
Fix issue with FASTQ files without adapters causing crashes for the insert size metrics module.
#160
rhpvorderman
closed
1 month ago
0
sequali crashes when no adapters are found
#159
Redmar-van-den-Berg
closed
1 month ago
3
Release 0.9.0
#158
rhpvorderman
closed
1 month ago
0
Release 0.9.0
#157
rhpvorderman
closed
1 month ago
0
Fix insert size metrics array resizing and start from a smaller size
#156
rhpvorderman
closed
1 month ago
0
Paired end report has the same order as single end report.
#155
rhpvorderman
closed
1 month ago
0
Add common human genome repeats and illumina Poly-G
#154
rhpvorderman
closed
1 month ago
0
Add very common repeats in the human genome.
#153
rhpvorderman
opened
1 month ago
0
Paired report order is hideous
#152
rhpvorderman
closed
1 month ago
0
Add polyA and PolyG to contaminants
#151
rhpvorderman
closed
1 month ago
0
Sequence identification in the overrepresented sequences module now uses sequence identity
#150
rhpvorderman
closed
1 month ago
0
Release 0.8.0
#149
rhpvorderman
closed
2 months ago
0
Fix memory leaks found by asan
#148
rhpvorderman
closed
2 months ago
0
Release 0.8.0
#147
rhpvorderman
closed
2 months ago
0
Release 0.8.0
#146
rhpvorderman
closed
2 months ago
0
Add a citation file and do some slight documentation updates.
#145
rhpvorderman
closed
2 months ago
0
Make insert size code look slightly nicer.
#144
rhpvorderman
closed
2 months ago
0
Fix various bugs in insert size metrics.
#143
rhpvorderman
closed
2 months ago
0
Cache creating the sequence index
#142
rhpvorderman
closed
2 months ago
0
Calculate insert size metrics using read 1 and read 2 overlap
#141
rhpvorderman
closed
2 months ago
0
Add a citation info file or chapter
#140
rhpvorderman
closed
2 months ago
2
Add a paired-end mode to sequali
#139
rhpvorderman
closed
2 months ago
0
What's the meaning of adapter content?
#138
dudududu12138
opened
2 months ago
6
Add facilities for paired-end parsing
#137
rhpvorderman
closed
2 months ago
0
Prevent cache pollution by using non-temporal hints for count arrays
#136
rhpvorderman
closed
2 months ago
0
Make sequali paired-end aware
#135
rhpvorderman
closed
2 months ago
1
Release 0.7.1
#134
rhpvorderman
closed
2 months ago
0
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