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richelbilderbeek
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Cer2016
Community Ecology Research course 2016
GNU General Public License v3.0
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Tuning operators
#122
richelbilderbeek
closed
7 years ago
1
Check nLTT package
#121
richelbilderbeek
closed
7 years ago
2
Every tenth posterior does not have an nLTT statistic
#120
richelbilderbeek
closed
7 years ago
1
do_test_simulations: create exact replicate fails when running tests locally
#119
richelbilderbeek
closed
7 years ago
1
Fix parse_beast_trees
#118
richelbilderbeek
closed
8 years ago
1
Relevant article 2?
#117
richelbilderbeek
closed
7 years ago
2
Use full posterior in workflow
#116
richelbilderbeek
closed
7 years ago
8
Obtain the posterior parameter estimates
#115
richelbilderbeek
closed
7 years ago
3
summarise works for mean but not for is_distributed_normally function
#114
richelbilderbeek
closed
7 years ago
7
Analyse time per added posterior per taxa and alignment length for longer run
#113
richelbilderbeek
closed
7 years ago
1
collected_nltt_stats bug
#112
richelbilderbeek
closed
8 years ago
0
collect_nltt_stats crash
#111
richelbilderbeek
closed
8 years ago
1
Check plagiarism
#110
richelbilderbeek
closed
8 years ago
1
Add proselint to Travis CI
#109
richelbilderbeek
closed
8 years ago
3
Better divide the PBD model in introduction and the creation of PBD species trees in Methods
#108
richelbilderbeek
closed
8 years ago
0
Use n_s (number of states) instead of MCMC chain length
#107
richelbilderbeek
closed
8 years ago
1
Update R packages and Cer2016 itself before running process
#106
richelbilderbeek
closed
8 years ago
0
read_collected_parameters returns old values
#105
richelbilderbeek
closed
8 years ago
5
Check if nLTT statistic between alignments differ using statistics
#104
richelbilderbeek
closed
7 years ago
2
Check if nLTT statistic between posteriors differ using statistics
#103
richelbilderbeek
closed
7 years ago
8
Check if nLTT statistic between stree_youngest and stree_oldest differ using statistics
#102
richelbilderbeek
closed
7 years ago
1
Analyse ESSes of posteriors
#101
richelbilderbeek
closed
7 years ago
9
Analyse time per added posterior per taxa and alignment length
#100
richelbilderbeek
closed
8 years ago
1
Show workflow
#99
richelbilderbeek
closed
8 years ago
1
Use nLTT::nltt_stat instead of approximation
#98
richelbilderbeek
closed
8 years ago
0
Make it 1K
#97
richelbilderbeek
closed
8 years ago
1
Add more memory to processes
#96
richelbilderbeek
closed
8 years ago
0
collect_n_taxa needs more memory
#95
richelbilderbeek
closed
8 years ago
1
Add parameter description?
#94
richelbilderbeek
closed
8 years ago
1
Use two incipient species trees per point in parameter space
#93
richelbilderbeek
closed
7 years ago
1
Peregrine cluster fails to produce an incipient species tree with 1G of memory
#92
richelbilderbeek
closed
8 years ago
3
Are the species trees generated with the same RNG seed?
#91
richelbilderbeek
closed
8 years ago
2
Do speed measurement with MCMC length equals 10 K properly
#90
richelbilderbeek
closed
8 years ago
1
Use GitHub LFS
#89
richelbilderbeek
closed
7 years ago
1
GitHub citations
#88
richelbilderbeek
closed
8 years ago
0
PDFs not created
#87
richelbilderbeek
closed
8 years ago
4
Use work from other packages
#86
richelbilderbeek
closed
7 years ago
1
BEAST2 fails on Travis
#85
richelbilderbeek
closed
8 years ago
3
Read detailed testthat log on Travis CI
#84
richelbilderbeek
closed
7 years ago
1
nLTT values do not go to one
#83
richelbilderbeek
closed
8 years ago
3
Use tibble instead of data.frame
#82
richelbilderbeek
closed
7 years ago
1
Use tidyr::expand to generate nice series
#81
richelbilderbeek
closed
8 years ago
2
Make warnings errors
#80
richelbilderbeek
closed
8 years ago
0
Improve timing analysis
#79
richelbilderbeek
closed
8 years ago
1
Follow the goodpractice package its advice
#78
richelbilderbeek
closed
8 years ago
1
Cannot find BEAST2 on Peregrine?
#77
richelbilderbeek
closed
8 years ago
1
ifxetex.sty not found on Peregrine
#76
richelbilderbeek
closed
8 years ago
6
Travis quits due to 30 min inresponsiveness
#75
richelbilderbeek
closed
8 years ago
2
Seperate job per posterior?
#74
richelbilderbeek
closed
7 years ago
1
Incorrect version of pandoc, where correct version is present
#73
richelbilderbeek
closed
8 years ago
8
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