richelbilderbeek Cer2016 issues

richelbilderbeek / Cer2016

Community Ecology Research course 2016

GNU General Public License v3.0

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Tuning operators

#122 richelbilderbeek closed 7 years ago
1
Check nLTT package

#121 richelbilderbeek closed 7 years ago
2
Every tenth posterior does not have an nLTT statistic

#120 richelbilderbeek closed 7 years ago
1
do_test_simulations: create exact replicate fails when running tests locally

#119 richelbilderbeek closed 7 years ago
1
Fix parse_beast_trees

#118 richelbilderbeek closed 8 years ago
1
Relevant article 2?

#117 richelbilderbeek closed 7 years ago
2
Use full posterior in workflow

#116 richelbilderbeek closed 7 years ago
8
Obtain the posterior parameter estimates

#115 richelbilderbeek closed 7 years ago
3
summarise works for mean but not for is_distributed_normally function

#114 richelbilderbeek closed 7 years ago
7
Analyse time per added posterior per taxa and alignment length for longer run

#113 richelbilderbeek closed 7 years ago
1
collected_nltt_stats bug

#112 richelbilderbeek closed 8 years ago
0
collect_nltt_stats crash

#111 richelbilderbeek closed 8 years ago
1
Check plagiarism

#110 richelbilderbeek closed 8 years ago
1
Add proselint to Travis CI

#109 richelbilderbeek closed 8 years ago
3
Better divide the PBD model in introduction and the creation of PBD species trees in Methods

#108 richelbilderbeek closed 8 years ago
0
Use n_s (number of states) instead of MCMC chain length

#107 richelbilderbeek closed 8 years ago
1
Update R packages and Cer2016 itself before running process

#106 richelbilderbeek closed 8 years ago
0
read_collected_parameters returns old values

#105 richelbilderbeek closed 8 years ago
5
Check if nLTT statistic between alignments differ using statistics

#104 richelbilderbeek closed 7 years ago
2
Check if nLTT statistic between posteriors differ using statistics

#103 richelbilderbeek closed 7 years ago
8
Check if nLTT statistic between stree_youngest and stree_oldest differ using statistics

#102 richelbilderbeek closed 7 years ago
1
Analyse ESSes of posteriors

#101 richelbilderbeek closed 7 years ago
9
Analyse time per added posterior per taxa and alignment length

#100 richelbilderbeek closed 8 years ago
1
Show workflow

#99 richelbilderbeek closed 8 years ago
1
Use nLTT::nltt_stat instead of approximation

#98 richelbilderbeek closed 8 years ago
0
Make it 1K

#97 richelbilderbeek closed 8 years ago
1
Add more memory to processes

#96 richelbilderbeek closed 8 years ago
0
collect_n_taxa needs more memory

#95 richelbilderbeek closed 8 years ago
1
Add parameter description?

#94 richelbilderbeek closed 8 years ago
1
Use two incipient species trees per point in parameter space

#93 richelbilderbeek closed 7 years ago
1
Peregrine cluster fails to produce an incipient species tree with 1G of memory

#92 richelbilderbeek closed 8 years ago
3
Are the species trees generated with the same RNG seed?

#91 richelbilderbeek closed 8 years ago
2
Do speed measurement with MCMC length equals 10 K properly

#90 richelbilderbeek closed 8 years ago
1
Use GitHub LFS

#89 richelbilderbeek closed 7 years ago
1
GitHub citations

#88 richelbilderbeek closed 8 years ago
0
PDFs not created

#87 richelbilderbeek closed 8 years ago
4
Use work from other packages

#86 richelbilderbeek closed 7 years ago
1
BEAST2 fails on Travis

#85 richelbilderbeek closed 8 years ago
3
Read detailed testthat log on Travis CI

#84 richelbilderbeek closed 7 years ago
1
nLTT values do not go to one

#83 richelbilderbeek closed 8 years ago
3
Use tibble instead of data.frame

#82 richelbilderbeek closed 7 years ago
1
Use tidyr::expand to generate nice series

#81 richelbilderbeek closed 8 years ago
2
Make warnings errors

#80 richelbilderbeek closed 8 years ago
0
Improve timing analysis

#79 richelbilderbeek closed 8 years ago
1
Follow the goodpractice package its advice

#78 richelbilderbeek closed 8 years ago
1
Cannot find BEAST2 on Peregrine?

#77 richelbilderbeek closed 8 years ago
1
ifxetex.sty not found on Peregrine

#76 richelbilderbeek closed 8 years ago
6
Travis quits due to 30 min inresponsiveness

#75 richelbilderbeek closed 8 years ago
2
Seperate job per posterior?

#74 richelbilderbeek closed 7 years ago
1
Incorrect version of pandoc, where correct version is present

#73 richelbilderbeek closed 8 years ago
8