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rki-mf1
/
cievad
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
https://github.com/rki-mf1/cievad
GNU General Public License v3.0
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Update README.md
#72
Krannich479
closed
2 weeks ago
0
merge dev into main for v0.5.0
#71
Krannich479
closed
1 month ago
0
added mason_additional_args parameter
#70
DimitriTernovoj
closed
1 month ago
0
Replacing static pbsim3
#69
DimitriTernovoj
closed
1 month ago
0
[hap.nf] Report N stretches in the provided genome
#68
Krannich479
closed
1 month ago
1
[hap.nf] Add Mason read quality parameters to interface
#67
Krannich479
closed
1 month ago
1
Update documentation
#66
Krannich479
closed
1 month ago
0
[hap.nf] PBSIM3 is availble on conda and should replace the static binary
#65
Krannich479
closed
1 month ago
1
check for `--callsets_dir` XOR `--sample_sheet` (EVAL)
#64
Krannich479
opened
3 months ago
0
bugfix: exiting the workflow
#63
DimitriTernovoj
closed
3 months ago
2
[hap.nf] sort + index bam by default
#62
Krannich479
opened
3 months ago
0
Fix bam name in hap.nf NGS wf
#61
Krannich479
closed
3 months ago
0
[eval.nf] No input run doesn't trigger exit 1
#60
Krannich479
closed
3 months ago
1
[Documentation] Nextflow minimum version requirement is out-of-date
#59
Krannich479
opened
3 months ago
0
Dev: critical bugfix in sompy summary
#58
Krannich479
closed
3 months ago
0
PR dev - PBSIM replaces NANOSIM, new version 0.4.0
#57
Krannich479
closed
3 months ago
0
ONT avg read is too low
#56
Krannich479
closed
3 months ago
2
Improve thread/cpu resource management
#55
Krannich479
opened
3 months ago
0
Retry processes at least once
#54
Krannich479
opened
3 months ago
0
Update README.md
#53
Krannich479
closed
4 months ago
0
Merge dev into main; bump to v0.3.1
#52
Krannich479
closed
4 months ago
0
Create LICENSE
#51
Krannich479
closed
4 months ago
0
Merge dev and push to version 0.3.0
#50
Krannich479
closed
4 months ago
0
[CI] Test invalid input with Github Actions
#49
Krannich479
opened
4 months ago
0
Initial Commit Help Pages
#48
DimitriTernovoj
closed
4 months ago
1
New CI tests
#47
Krannich479
closed
4 months ago
0
CI restructuring
#46
Krannich479
closed
4 months ago
0
update CI branch
#45
Krannich479
closed
4 months ago
0
Test callset_dir vs sammple_sheet with GH Actions / CI
#44
Krannich479
closed
4 months ago
1
Example for sample sheet in a Wiki page
#43
Krannich479
closed
4 months ago
1
added sample_sheet feature
#42
DimitriTernovoj
closed
4 months ago
1
merge dev
#41
Krannich479
closed
5 months ago
0
Nextflow run via organization+tool name
#40
Krannich479
opened
5 months ago
3
Help pages
#39
Krannich479
closed
4 months ago
1
[eval.nf] Summary of stats across samples
#38
Krannich479
closed
5 months ago
1
Update issue templates
#37
Krannich479
closed
5 months ago
0
Add Nanopore data generation
#36
Krannich479
closed
5 months ago
1
[eval.nf] som.py stats miss first index
#35
Krannich479
closed
5 months ago
0
Add license once this repo goes public
#34
Krannich479
closed
4 months ago
1
Merge dev
#33
Krannich479
closed
5 months ago
1
Update GH-CI
#32
Krannich479
closed
5 months ago
0
Nxf
#31
Krannich479
closed
5 months ago
0
New CI for NF branch
#30
Krannich479
closed
5 months ago
2
New README for NF branch
#29
Krannich479
closed
5 months ago
1
First push of redesign in Nextflow
#28
Krannich479
closed
7 months ago
0
Missing tools in snakemake7 env
#27
NmnBttr
closed
5 months ago
2
Do hap+ngs module generate heterozygous variants?
#26
Krannich479
closed
7 months ago
1
Replace binary of amplisim with (bio)conda installation
#25
Krannich479
closed
7 months ago
1
Dev including CI
#24
Krannich479
closed
11 months ago
1
add CI
#23
Krannich479
closed
12 months ago
0
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