rmkoesterer uga issues - Githubissues

rmkoesterer / uga

Universal Genome Analyst (uga) is an open, flexible, and efficient tool for the distribution, management, and visualization of whole genome data analyses.

GNU General Public License v3.0

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Python3

#32 rmkoesterer closed 5 years ago
0
UGA v2.0b10 could not find the right R version

#31 wusixer closed 5 years ago
2
UGA tools could not work on splitted files

#30 wusixer closed 5 years ago
3
eliminate determination of logistic vs linear using phenotype category count

#29 rmkoesterer opened 6 years ago
0
duplicated covariates/interaction terms caused error in reading pheno file

#28 rmkoesterer closed 6 years ago
1
Colon in variant id gets converted to underscore

#27 rmkoesterer closed 5 years ago
1
models for lme

#26 rsherva closed 6 years ago
1
error when running "snvgroupplot"

#25 shirley0818 closed 7 years ago
8
freq.case/ctrl incorrect

#24 rmkoesterer closed 7 years ago
1
don't require 'freq' column in order to merge flipped SNP

#23 rmkoesterer closed 7 years ago
0
Allow job map input

#22 rmkoesterer opened 7 years ago
0
output single variant result in gene-based test

#21 shirley0818 closed 7 years ago
12
--meta: command not found in uga v2.0b3

#20 shirley0818 closed 7 years ago
2
add conditioning on a variant

#19 rmkoesterer opened 8 years ago
0
allow resubmitting failed jobs with additional options

#18 rmkoesterer opened 8 years ago
0
file compilation leaves '.o' log files after answering yes to remove old files

#17 rmkoesterer opened 8 years ago
0
better method for indep test calcs

#16 rmkoesterer opened 8 years ago
0
resubmit file mapping

#15 rmkoesterer closed 8 years ago
1
manual lambda option

#14 rmkoesterer opened 8 years ago
0
add tools for subsetting vcf files

#13 rmkoesterer closed 8 years ago
1
sample subset option

#12 rmkoesterer opened 8 years ago
0
--interact problem

#11 rmkoesterer closed 8 years ago
1
Is the new version able to do the gene-based test of survival analysis?

#10 yiyimanew opened 8 years ago
2
duplicate IDs produce empty output files

#9 rsherva opened 8 years ago
3
duplicate snps cause duplicate rows in output

#8 rmkoesterer opened 8 years ago
2
no snps in region causes crash in main

#7 rmkoesterer closed 7 years ago
0
rerun.pkl file deletes too early

#6 rmkoesterer closed 8 years ago
1
P-value filtering

#5 rsherva opened 8 years ago
0
SNP names in annotation

#4 rsherva opened 8 years ago
1
convert_to_r_dataframe depracated

#3 rmkoesterer closed 8 years ago
1
maximum memory used not reporting correctly

#2 rmkoesterer closed 8 years ago
1
incorrect tabix mapping of compiled results

#1 rmkoesterer closed 8 years ago
1