issues
search
ropensci
/
taxizedb
Tools for Working with Taxonomic SQL Databases
Other
30
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
move away from RMySQL
#36
Andreas-Bio
closed
6 years ago
4
Add optional progress to download functions
#35
sckott
closed
4 years ago
0
Add parameter to download functions to optionally update
#34
sckott
closed
3 years ago
7
Patch circle-ci
#33
cboettig
closed
6 years ago
3
possibly use cached `taxize` objects for test suite?
#32
sckott
opened
6 years ago
6
`db_download`: add parameter to force re-download of the DB
#31
sckott
closed
3 years ago
1
database tests and debugging
#30
cboettig
closed
6 years ago
11
load_gbif incorrectly claims 'sqlite3 not available'
#29
cboettig
closed
6 years ago
7
db_load_* functions don't take host address
#28
cboettig
closed
6 years ago
5
`name2taxid` includes some questionable material
#27
arendsee
opened
6 years ago
4
update gbif sqlite data
#26
sckott
closed
4 years ago
1
Extend new NCBI functionality to the other databases
#25
arendsee
closed
4 years ago
2
Protect against SQL injection attacks
#24
sckott
closed
6 years ago
5
Unnest hierarchy table and add `taxid2rank` and `downstream` functions
#23
arendsee
closed
6 years ago
14
Fix #21
#22
arendsee
closed
6 years ago
2
taxizedb::name2taxid fails on duplicated names
#21
arendsee
closed
6 years ago
1
Add `children`, `taxid2name`, `name2taxid` and `name2taxid_map` functions
#20
arendsee
closed
6 years ago
10
Add `classification` function
#19
arendsee
closed
6 years ago
12
Import NCBI taxonomy table as SQLite DB
#18
arendsee
closed
6 years ago
14
Add a vignette
#17
sckott
closed
4 years ago
3
with dplyr update, need dbplyr
#16
sckott
closed
7 years ago
0
man page on troubleshooting installation of SQL libraries
#15
sckott
closed
4 years ago
1
improve docs on auth details for each database type
#14
sckott
closed
5 years ago
1
Fix example code for Catalogue of Life database download
#13
tdjames1
closed
7 years ago
4
maybe remove backend_set/_get for now?
#12
sckott
closed
7 years ago
0
add checks for whether SQL dbs running/on
#11
sckott
closed
7 years ago
0
use sys instead of system()
#10
sckott
closed
5 years ago
2
Use hoardr for caching
#9
sckott
closed
7 years ago
0
Use gbif-backbone-sql on S3 for GBIF backbone source
#8
sckott
closed
7 years ago
0
downstream sql version in inst/ignore
#7
sckott
closed
4 years ago
0
downloading error in `db_download_*` functions (due to missing directory .taxize_local)
#6
dlebauer
closed
7 years ago
5
possibly have sqlite as an option
#5
sckott
closed
5 years ago
1
Feedback
#4
sckott
closed
7 years ago
7
Put in checks for presence of SQL database clients installed on users machines
#3
sckott
closed
7 years ago
1
Data sources
#2
sckott
closed
6 years ago
6
Docker image for taxize bundled with SQL Dbs
#1
sckott
closed
4 years ago
19
Previous