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rosalindfranklininstitute
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parakeet
Phantom generator
GNU General Public License v3.0
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Add Brownian motion of particles for beam induced motion
#71
JatGreer
opened
6 months ago
0
Issue 61
#70
jmp1985
closed
8 months ago
0
Enable add_molecules to be called multiple times
#69
jmp1985
closed
8 months ago
0
Make simplified API for including in algorithms
#68
jmp1985
opened
9 months ago
0
Improve API for integration with Scipion
#67
jmp1985
opened
9 months ago
0
Improve API for integration with CCPEM
#66
jmp1985
opened
9 months ago
0
Implement hybrid simulation methods
#65
jmp1985
opened
9 months ago
0
Improve beam damage modelling
#64
jmp1985
opened
9 months ago
0
Improve sample modelling
#63
jmp1985
opened
9 months ago
0
Add absorption potential
#62
jmp1985
opened
9 months ago
0
Expose configuration for objective aperature diameter
#61
jmp1985
closed
8 months ago
0
Test
#60
jmp1985
closed
9 months ago
0
Enable intermediate inspection of simulated images
#59
jmp1985
opened
10 months ago
0
Add function to export sample coords to PDB/CIF format
#58
jmp1985
opened
10 months ago
0
Can't run add_molecules more than once
#57
jmp1985
closed
8 months ago
0
Add ability to set GPU ID
#56
jmp1985
closed
10 months ago
0
Specifying GPU ID
#55
MohamadHarastani
opened
10 months ago
7
Resources temporary unavailable
#54
MohamadHarastani
closed
9 months ago
4
New Pydantic v2.0 breaks parakeet
#53
DimitriosBellos
closed
1 year ago
2
doppio beta tag causing unknown pip installation error
#52
JatGreer
closed
1 year ago
4
Cbed
#51
jmp1985
closed
1 year ago
0
Add a grid scan
#50
jmp1985
closed
1 year ago
0
Problem with "extended_header" in parakeet.export
#49
majtner
closed
1 year ago
2
Exporting metadata to specified directory broken due to unpassed arguments
#48
JatGreer
closed
1 year ago
0
Unrealistic noise level when pixel value is other than 1 Angstrom
#47
MohamadHarastani
opened
1 year ago
9
Improve custom sample potential stuff
#46
jmp1985
opened
1 year ago
0
Simulation padding of 0 removes image (due to array slicing)
#45
JatGreer
closed
1 year ago
1
Documentation Update - Docker, Singularity, Baskerville
#44
DimitriosBellos
closed
1 year ago
0
Add movie frames
#43
jmp1985
closed
1 year ago
0
Fix for python3.6
#42
jmp1985
closed
1 year ago
0
A few bugs
#41
MohamadHarastani
closed
1 year ago
2
Method fails when DQE is set to true
#40
MohamadHarastani
closed
1 year ago
1
Dose symmetry does not work as expected
#39
MohamadHarastani
closed
1 year ago
3
Mention of non-python dependancies in README.md
#38
DimitriosBellos
closed
1 year ago
2
Add profet
#37
jmp1985
closed
1 year ago
0
Implement beam tilt scan
#36
jmp1985
closed
1 year ago
0
Pipeliner metadata
#35
jmp1985
closed
1 year ago
0
Add model for defocus gradient
#34
as2875
closed
1 year ago
0
Installation on CentOS Linux
#33
majtner
closed
1 year ago
1
Refactor sim
#32
jmp1985
closed
9 months ago
0
Update io
#31
jmp1985
closed
2 years ago
0
Inelastic
#30
jmp1985
closed
1 year ago
0
Fix lgtm warnings
#26
jmp1985
closed
2 years ago
0
Update api
#25
jmp1985
closed
2 years ago
0
Support for Docker and Singularity
#24
DimitriosBellos
closed
2 years ago
1
The num defocus argument has now been added to parakeet.analyse.correct
#23
DimitriosBellos
closed
2 years ago
0
Improve python API
#22
jmp1985
closed
2 years ago
0
Add ability to export corrected mrc file to HDF5
#21
jmp1985
opened
2 years ago
2
Error in parakeet.simulate.exit_wave (AttributeError: 'multem_ext.Input' object has no attribute 'cond_lens_si_sigma')
#20
DimitriosBellos
closed
2 years ago
3
Wrapper for guanaco.correct_file in parakeet
#19
DimitriosBellos
closed
2 years ago
0
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