rpolicastro tsrexplorer_old issues

rpolicastro / tsrexplorer_old

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volcano plot stuff

#50 rpolicastro opened 4 years ago
0
proofreading of standard analysis vignette

#49 gzentner closed 4 years ago
0
Threshold exploration detected features definition

#48 zentnerlab opened 4 years ago
0
Detected feature jitter plots

#47 zentnerlab opened 4 years ago
0
Error in gene track generation

#46 zentnerlab opened 4 years ago
0
Working on documentation

#45 gzentner closed 4 years ago
0
Gviz error

#44 gzentner closed 4 years ago
1
TSR TMM normalization error

#43 gzentner closed 4 years ago
1
TSS correlation heatmap values

#42 gzentner opened 4 years ago
0
ggplot2

#41 gzentner closed 4 years ago
1
Hierarchically clustered heatmap issue

#40 gzentner closed 4 years ago
1
Gviz

#39 gzentner closed 4 years ago
1
Dinucleotide frequencies in TSS analysis documentation

#38 zentnerlab closed 4 years ago
1
Average plots = density plots

#37 zentnerlab closed 4 years ago
1
Normalization of TSR nTAGs requires column labeled "nTAGs"

#36 gzentner closed 4 years ago
1
missing factor levels in tss heatmap

#35 rpolicastro closed 4 years ago
1
Error in explore_thresholds

#34 gzentner closed 4 years ago
2
Threshold plot function

#33 gzentner closed 4 years ago
1
genomic_distribution documentation

#32 gzentner closed 4 years ago
1
Reordering samples in plots

#31 gzentner closed 4 years ago
2
NAs in human annotation

#30 gzentner closed 4 years ago
2
Store correlation coefficients

#29 gzentner opened 4 years ago
1
TxDb import

#28 gzentner closed 4 years ago
1
feature_type unused in annotate_differential_tsrs in dev branch

#27 gzentner closed 4 years ago
1
Ordering of quantile plots

#26 gzentner closed 4 years ago
1
Unknown columns in plot_tsr_metric

#25 gzentner closed 4 years ago
3
TSS nTAGS handling

#24 gzentner closed 4 years ago
1
Error from max_utr

#23 gzentner closed 4 years ago
1
Add correlation coefficients to heatmap

#22 gzentner opened 4 years ago
0
Score column name in normalization of TSSs vs. TSRs

#21 gzentner closed 4 years ago
2
Color of hierarchically clustered heatmap

#20 gzentner closed 4 years ago
2
TSR correlation

#19 gzentner closed 4 years ago
1
Normalization

#18 gzentner closed 4 years ago
2
Filtering

#17 gzentner closed 4 years ago
1
Color schemes

#16 gzentner opened 5 years ago
1
Heatmap issue

#15 gzentner closed 5 years ago
1
dinucleotide_frequencies

#14 zentnerlab closed 4 years ago
4
tss_heatmap_matrix scale

#13 zentnerlab closed 5 years ago
1
Example average plot scaling

#12 zentnerlab closed 5 years ago
1
TSS genomic distribution quantiles

#11 zentnerlab closed 5 years ago
2
Error in quantiles for genome_distribution

#10 zentnerlab closed 4 years ago
2
ggplot2 loading

#9 zentnerlab closed 5 years ago
1
Correlation type information for ?plot_correlation

#8 zentnerlab closed 4 years ago
1
TSR complexity

#7 zentnerlab opened 5 years ago
0
Plot types for plot_tsr_metric

#6 zentnerlab closed 5 years ago
1
GO analysis

#5 zentnerlab closed 5 years ago
1
Euler diagrams for DE TSRs/genes

#4 zentnerlab opened 5 years ago
0
Cumulative DEG plot

#3 zentnerlab opened 5 years ago
0
# genes with TSRs plot

#2 zentnerlab closed 5 years ago
1
feature request - hierarchical clustering of large sets of comparisons

#1 zentnerlab closed 5 years ago
1