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ruanjue
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wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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version of wtdbg2 in conda
#221
shri1984
opened
3 years ago
1
Trouble understanding the GFAs obtained from wtdbg2
#220
jflot
opened
3 years ago
5
Killing at Kmer scanning step
#219
andreyurch
opened
3 years ago
3
how to adjusting parameters to improve the assembly result
#218
linshengnan2020
opened
3 years ago
8
Plasmid problems
#217
davidvilanova
closed
3 years ago
2
p(kmer) VS k(kmer) Question(s)
#216
cement-head
opened
4 years ago
1
Looking for explanation of a few assembly parameters
#215
yeban
closed
4 years ago
2
Parameter tuning for small (~5k) plasmids
#214
fredyr
opened
4 years ago
2
Segmentation fault with Slurm exit code 139
#213
biowackysci
closed
4 years ago
8
wtdbg2 killed after indexing kmers
#212
gchchung
closed
4 years ago
4
assembly size increased slightly after long-reads polishment
#211
binlu1981
opened
4 years ago
1
polishing strategy choice
#210
binlu1981
opened
4 years ago
3
Change kmer size to 27?
#209
cement-head
closed
4 years ago
2
issue with visualising GFA using bandage
#208
unnatisonawala
closed
3 years ago
3
is there a checkpoint in wtdbg2
#207
daiqinli
closed
4 years ago
5
Consensus exited - dbgcns.h:1122 --
#206
msikic
closed
4 years ago
2
parameters setting for 30X raw/corrected ONT reads
#205
HanKMU
closed
4 years ago
2
output of kbm2
#204
csuzhang
closed
4 years ago
1
- A option: What do you mean by contained reads?
#203
GracelinTina
closed
4 years ago
1
polishment using other tools
#202
wangjiawen2013
closed
4 years ago
1
Raw reads type
#201
Raj-anikanth
closed
4 years ago
1
rGFA
#200
jdmontenegro
closed
4 years ago
1
The genome size and N50 of the genome is much smaller after polished for 2 times, the old polish tools such as pilon, after polishment, the genome and N50 will be a little bigger than before, and which type of snp/indel is changed?
#199
forrwill
closed
4 years ago
12
Unexpected out of memory error
#198
skagawa2
closed
4 years ago
3
core dump illegal instructions
#197
giancarloRussoFGCZ
closed
4 years ago
1
time complexity
#196
warrenlr
closed
4 years ago
2
mistake in output on server
#195
twolfe
closed
4 years ago
1
What does ‘share k-mers’ mean?
#194
phoenix-jiaqi
closed
4 years ago
2
resume assembly
#193
jdmontenegro
closed
4 years ago
5
fungi genome
#192
Lyang556
closed
4 years ago
6
recommended tests and test data
#191
mr-c
closed
4 years ago
13
metagenomic sample parameters
#190
deearahman
closed
4 years ago
1
Generating lay.gz for unitigs
#189
fredzhou91
closed
4 years ago
7
Pronunciation and meaning of wtdbg?
#188
dzyim
closed
4 years ago
1
The log display for the wtdbg2
#187
fredzhou91
closed
4 years ago
2
exceeding maximum object size (-Walloc-size-larger-than)
#186
Smattr
closed
4 years ago
1
squash GCC -Wimplicit-fallthrough warnings
#185
Smattr
closed
4 years ago
3
fix mmap failure checks
#184
Smattr
closed
4 years ago
1
-g option (small genome)
#183
tay45
closed
4 years ago
3
complex genome with high heterozygosity and high duplication
#182
fengyuanli304
closed
4 years ago
8
Get different number of contigs when using single vs. multiple cores (local assembly)
#181
shunhuahan
closed
4 years ago
9
something wrong in pgzf_inflate_core -- pgzf.h:304
#180
xiekunwhy
closed
4 years ago
5
What if users use corrected reads instead of raw long-reads?
#179
DomeJoyce
closed
4 years ago
3
Potential Parameter for Assembling non PCR-Free Virus Genome
#178
yonghanyu
closed
4 years ago
8
Failed Build
#177
rracicot
closed
4 years ago
1
Genome Size Parameter vs. Output consensus
#176
agos316
closed
4 years ago
2
Assembled sequences lower than estimated
#175
melop
closed
4 years ago
2
-L and -S parameters
#174
A-J-F-Mackintosh
closed
4 years ago
2
-edge-min 1: does it report all edges? or just best-overlap edges?
#173
chocotwig
closed
4 years ago
1
wtdbg2 may produce an assembly smaller than the true genome
#172
Lordhooze
closed
4 years ago
13
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