ruanjue wtdbg2 issues - Githubissues

ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

GNU General Public License v3.0

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wtdbg2 selects too few reads based on coverage

#171 conchoecia closed 4 years ago
5
Extremely Low Coverage Assembly

#170 chocotwig closed 4 years ago
3
Big total base but low contig length.

#169 lancer-lu closed 4 years ago
3
Conceptual Question about wtdbg2

#168 chocotwig closed 4 years ago
3
how to use wtdbg-dot2gfa.pl

#167 csuzhang closed 4 years ago
3
Assembly size with ONT reads

#166 ghost closed 4 years ago
1
Positions and consensus sequences of alternative SV alleles

#165 JYLeeBioinfo closed 4 years ago
1
Help with metrics

#164 cement-head closed 4 years ago
5
[E::sam_parse1] no SQ lines present in the header

#163 mictadlo closed 4 years ago
6
Illegal Instructions (core dumped)

#162 andrewdchen closed 4 years ago
12
Can not make correctly

#161 Yixiangzhang1996 closed 4 years ago
1
Racon and Pilon

#160 mictadlo closed 4 years ago
5
ONT & PacBioSII data

#159 cement-head closed 4 years ago
2
`canonicalize_file_name` is not too portable, replace?

#158 bschiffthaler closed 4 years ago
1
PacBio HiFi read assembly

#157 chklopp closed 4 years ago
1
Segmentation fault

#156 MaartjeRZ closed 4 years ago
15
Restarting WTDBG2 after computer reboot

#155 cabbagesofdoom closed 4 years ago
2
statistics of assembly results

#154 yangxiaofeill closed 5 years ago
4
compiled error

#153 baizixiansheng closed 5 years ago
1
Missing zlib -- fatal error of 'make'

#152 YongZhou2019 closed 5 years ago
2
Peculiar consensus sequence

#151 andreaswallberg closed 4 years ago
2
wtdbg2.pl is not installed via make, missing from PROGS

#150 tseemann closed 5 years ago
1
more data -> worse assembly??

#149 PeterEmmrich closed 5 years ago
7
Parameter suggestions for a repetitive, medium-sized plant genome

#148 davidecarlson closed 5 years ago
3
estimated output size

#147 astulaaa closed 5 years ago
1
polishing using short reads. bwa mem error: [E::bwa_idx_load_from_disk]

#146 astulaaa closed 5 years ago
1
reproducibility of assemblies: 3 different results running the same dataset 3 times

#145 michieitel closed 4 years ago
1
Polishing consensus failure, empty BAM file

#144 sjfleck closed 5 years ago
4
Disk space

#143 ctxchris closed 5 years ago
2
Reg: Assembly of a tetraploid genome

#142 harish0201 closed 5 years ago
2
warnings while compiling wtdbg2

#141 Coaxecva closed 5 years ago
1
Is RAM an issue to build contig layout file after alignments are built?

#140 vinayciba closed 4 years ago
3
Haploid genome assembly - weird k-mer distribution

#139 vsuryaw closed 5 years ago
2
Assembly autopolyploid genome

#138 Xuelei-Dai closed 5 years ago
2
fasta number in wtdbg2

#137 baozg closed 5 years ago
4
Reg: Colors in *.dot.gz and other queries

#136 harish0201 closed 5 years ago
4
是否支持集群

#135 focusjava closed 5 years ago
3
Alignment step running for four days

#134 pi3rrr3 closed 4 years ago
5
help for Segmentation fault

#133 bitcometz closed 5 years ago
3
slurmstepd: error: Detected 6 oom-kill event(s) in step 640467.batch cgroup. Some of your processes may have been killed by the cgroup out-of-memory handler.

#132 biowackysci closed 5 years ago
5
Feature request: only accept input reads in table

#131 andreaswallberg closed 5 years ago
4
Splitting FIXP kmers, assertion issues and parameter queries

#130 harish0201 closed 5 years ago
4
Reg: Invalid kmer size

#129 harish0201 closed 5 years ago
1
WTDBG2: -t meaning

#128 Caro-Ca closed 5 years ago
4
assembly a high heterozygous plant genome

#127 yilunhuangyue closed 4 years ago
8
does wtdb2 remove adapters after sequencing in Nanopore ?

#126 Caro-Ca closed 5 years ago
2
Estimation of the operation time

#125 jacqgg closed 5 years ago
8
Wtdbg2 assembly causes duplicated and flipped region in genome

#124 aakanshajr closed 4 years ago
11
-R is not working (Enable re-alignment)

#123 bitcometz closed 5 years ago
1
Added -p and -k; code cleanup

#122 lh3 closed 5 years ago
0

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