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STITCH
STITCH - Sequencing To Imputation Through Constructing Haplotypes
http://www.nature.com/ng/journal/v48/n8/abs/ng.3594.html
GNU General Public License v3.0
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How to use stitch
#52
YQ511
closed
3 years ago
1
how to produce input file
#51
yao-chenxin
opened
3 years ago
1
Intermediate .RData files to outputs VCF format
#50
lanxianmei
closed
1 year ago
2
A question about the results of STITCH
#49
Tengjun0520
closed
1 year ago
4
1: In readLines(bamlist) : incomplete final line found on '627bam.txt'
#48
linlin-pp
closed
1 year ago
6
[E::bgzf_read_block] inflate_block error -1
#47
linlin-pp
closed
1 year ago
2
Impute sex chromosomes properly
#46
rwdavies
opened
3 years ago
2
Problem compiling STITCH
#45
rmott
closed
3 years ago
4
sh: /tmp/Rtmp62FCsV/MUYOXGCEGC/files_to_transfer.txt: No such file or directory
#44
linlin-pp
closed
1 year ago
7
Error with reference panel usage in input to eigen
#43
rwdavies
opened
4 years ago
0
*** caught segfault *** address 0xa14d9000, cause 'memory not mapped'
#42
EdBreen
closed
1 year ago
4
Error in get_sample_names
#41
SABiagini
opened
4 years ago
2
1.6.3 vs 1.6.5 output differences?
#40
jelber2
closed
4 years ago
2
Update STITCH.R to add sessionInfo()
#39
jelber2
closed
4 years ago
4
STITCH 1.6.3 conda install seems to need libiconv for rsync to work
#38
jelber2
closed
4 years ago
4
NA in correlation
#37
madleina
closed
4 years ago
0
How to set K and nGen for plant
#36
SC-Duan
closed
4 years ago
2
Error when using specific number of cores
#35
fbartusch
closed
4 years ago
2
fix validate_genetic_map
#34
huangzhibo
closed
4 years ago
1
Running STITCH with Only BAM Files
#33
cwarden45
closed
4 years ago
5
"split reads" iteration causes error: Mat::operator(): index out of bounds
#32
TeresaPegan
closed
1 year ago
4
STITCH requires openblas, seems to be incompatible with openblas 0.3.8 (latest version)
#31
TeresaPegan
closed
4 years ago
3
Increasing memory usage with --nCores
#30
jelber2
closed
4 years ago
2
Can STITCH be a free alternative to Gencove for low-coverage WGS?
#29
cwarden45
closed
4 years ago
33
Add GL and/or PL tag as standard to VCF output
#28
rwdavies
opened
4 years ago
0
error about 1.6.1
#27
Zilong-Li
closed
5 years ago
3
Ref hap format
#26
rwdavies
closed
5 years ago
0
Error while using v1.6.0
#25
X-human
closed
1 year ago
6
Speedup reference EM updates
#24
rwdavies
closed
5 years ago
0
Slightly change smoothing definition. Be able to smooth genetic map
#23
rwdavies
closed
5 years ago
0
Ref recomb rate
#22
rwdavies
closed
5 years ago
0
Fix
#21
rwdavies
closed
5 years ago
0
Merge dev into master
#20
rwdavies
closed
5 years ago
0
Error in if ((r < 0.9) | (1.1 < r))
#19
Zilong-Li
closed
5 years ago
1
impute on set of WGBS bams + reference 1000G bams
#18
avilella
closed
1 year ago
4
question about input format
#17
EclipseCN
opened
5 years ago
8
Reproducible Error for some data
#16
suestring7
closed
5 years ago
11
Error in validate_shuffleHaplotypeIterations
#15
vigneshravi
opened
5 years ago
6
Error in STITCH - Execution halted
#14
vigneshravi
closed
5 years ago
6
Pull request demo
#13
rwdavies
closed
5 years ago
0
Problem loading STITCH during installation
#12
boryanakis
closed
5 years ago
13
error bgzf_read
#11
burningangel
closed
6 years ago
3
Output haplotypes
#10
aziouez25
closed
6 years ago
5
error
#9
smangul1
closed
5 years ago
6
Slow input file conversion
#8
oushujun
opened
6 years ago
4
Error in rep(" ", y - 3) : invalid 'times' argument
#7
Zilong-Li
closed
5 years ago
1
STITCH compilation issue
#6
Zilong-Li
closed
5 years ago
7
Terminate error seems randomly happen
#5
suestring7
opened
7 years ago
15
Can widely varied depth samples run together?
#4
TrilbyWhite
opened
7 years ago
3
Termination error caused by outputBlockRange length zero
#3
stsmall
closed
7 years ago
8
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