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s312569
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clj-biosequence
A Clojure library designed to make the manipulation of biological sequence data easier.
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Genbank record as map?
#35
averagehat
opened
8 years ago
3
Continuous Integration
#34
averagehat
closed
8 years ago
1
Auto-capitalize checked alphabets
#33
averagehat
closed
8 years ago
1
Regression in 0.4.3 failed parsing
#32
averagehat
closed
8 years ago
2
Sequence as plain string
#31
averagehat
opened
8 years ago
1
Gap characters in sequences?
#30
metasoarous
closed
9 years ago
2
Non-XML Genbank support?
#29
metasoarous
opened
9 years ago
1
Curious why you didn't use instaparse for parsing
#28
metasoarous
opened
9 years ago
8
Phylogenetics within scope?
#27
metasoarous
opened
9 years ago
5
Nexus format?
#26
metasoarous
opened
9 years ago
1
indexed blast parameters
#25
s312569
opened
9 years ago
0
fix indexes so they can be moved
#24
s312569
closed
9 years ago
0
blast needs redoing - particularly significant-biosequence-seq etc
#23
s312569
opened
9 years ago
0
remove newlines from bioseq->string
#22
s312569
closed
9 years ago
0
fix print alignment - needs to return a string not print
#21
s312569
closed
9 years ago
0
File level alphabet functions
#20
s312569
opened
10 years ago
0
Index signalp
#19
s312569
opened
10 years ago
0
TMHMM needs redesigning to be more like signalp
#18
s312569
opened
10 years ago
0
Disallowed parameters for signalp and blast
#17
s312569
opened
10 years ago
0
Blast parameter accessors don't work
#16
s312569
closed
10 years ago
0
Documentation!!
#15
s312569
opened
10 years ago
4
IO for zip files
#14
s312569
closed
9 years ago
0
Genbank citations don't use citation class
#13
s312569
closed
9 years ago
0
Type hinting of sequence arrays?
#12
s312569
closed
9 years ago
0
Blast alignment broken
#11
s312569
closed
10 years ago
0
Signalp error handling
#10
s312569
closed
10 years ago
0
Blast indexing interface doesn't make sense
#9
s312569
closed
10 years ago
0
Persistence documentation
#8
s312569
closed
10 years ago
0
Better way of handling blast files after searching finished.
#7
s312569
closed
10 years ago
0
Object update mechanism
#6
s312569
closed
11 years ago
0
Tests
#5
s312569
closed
10 years ago
0
Genbank web access
#4
s312569
closed
11 years ago
0
Wrong exception
#3
s312569
closed
10 years ago
0
Documentation
#2
s312569
closed
10 years ago
0
Search functions need to return counts
#1
s312569
closed
11 years ago
0