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saezlab
/
decoupleR
R package to infer biological activities from omics data using a collection of methods.
https://saezlab.github.io/decoupleR/
GNU General Public License v3.0
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Merve devel into master
#30
jvelezmagic
closed
3 years ago
0
scira same results as original repo
#29
jvelezmagic
closed
3 years ago
0
Can't reproduce SCIRA results
#28
PauBadiaM
closed
3 years ago
1
Include Over Representation Analysis: `run_ora()`
#27
jvelezmagic
closed
3 years ago
0
Don't allow to change the size of regulons. This should be doing it before running any decouple statistic function
#26
jvelezmagic
closed
3 years ago
0
function can't handle matrix with only one column
#25
adugourd
closed
3 years ago
0
Bug when using run_mean for kinase activity estimation.
#24
adugourd
closed
3 years ago
3
NA handling by normalised_mean
#23
adugourd
closed
3 years ago
2
Benchmark Pipeline PR
#22
dbdimitrov
closed
2 years ago
1
added links to methods and networks
#21
roramirezf
closed
3 years ago
0
Integrate development version into master
#20
jvelezmagic
closed
3 years ago
0
Documentation
#19
jvelezmagic
closed
3 years ago
0
Add scira modifications to devel-jesus branch
#18
jvelezmagic
closed
3 years ago
0
Incorporate gsva statistic to devel branch
#17
jvelezmagic
closed
3 years ago
0
Add decuple() to main devel branch
#16
jvelezmagic
closed
3 years ago
0
Devel jesus
#15
jvelezmagic
closed
3 years ago
0
singscore
#14
dbdimitrov
closed
2 years ago
0
Add reformat dataset-converters to devel-jesus branch
#13
jvelezmagic
closed
3 years ago
0
Add run_mean() method to the devel-jesus branch
#12
jvelezmagic
closed
3 years ago
0
Singscore + regnetwork example
#11
dbdimitrov
closed
3 years ago
0
Singscore + regnetwork example
#10
dbdimitrov
closed
3 years ago
0
singscore
#9
dbdimitrov
closed
3 years ago
0
Revert "Add scira and pscira methods" to revision
#8
jvelezmagic
closed
3 years ago
0
Add mean statistic
#7
jvelezmagic
closed
3 years ago
0
Add scira and pscira methods
#6
jvelezmagic
closed
3 years ago
0
Add scira and pscira methods
#5
jvelezmagic
closed
3 years ago
0
Add multiPLIER
#4
JanaBraunger
closed
3 years ago
1
Add mean statistic
#3
christianholland
closed
3 years ago
0
Complemented run_viper tests
#2
christianholland
closed
4 years ago
0
Add GSEA
#1
christianholland
closed
3 years ago
1
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