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saezlab
/
decoupleR
R package to infer biological activities from omics data using a collection of methods.
https://saezlab.github.io/decoupleR/
GNU General Public License v3.0
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Error in `convert_f_defaults()`:
#79
hemantgujar
closed
1 year ago
4
get_dorothea return an error with latest version of dplyr
#78
pedriniedoardo
closed
1 year ago
2
Differences between two ways of getting dorothea database
#76
yunbokai
closed
1 year ago
2
Omnipath not accessible with get_resource()
#75
quyaingo
closed
1 year ago
2
genes vf tf heatmap
#74
imerelli
closed
1 year ago
1
added get_KSN_omnipath function
#73
adugourd
closed
1 year ago
9
mutate error when downloading dorothea
#72
roskcl
closed
1 year ago
2
colinearity
#71
imerelli
closed
1 year ago
4
Equivalent variable of t-value from limma in Deseq2 generated DEGs results
#70
Diennguyen8290
closed
1 year ago
2
Error in mutate() when running get_dorothea()
#69
dano602
closed
1 year ago
2
Discrepancy TF-Target database downloaded from DoRothEA and decoupleR
#68
harimchun
closed
1 year ago
2
Using decoupleR across conditions
#67
singhh5050
closed
1 year ago
3
Fix mlm multicond
#66
gabora
closed
1 year ago
0
Issue with Omnipath retrieving data
#65
jsangalang
closed
1 year ago
3
Issue when running large dataset
#64
cnk113
closed
1 year ago
1
Error in parse(text = elt)
#63
arnaudmet
closed
1 year ago
5
GSVA error
#62
tonyjhlam
closed
1 year ago
2
Issues retrieving data from PROGENy using decoupleR & OmintpathR
#61
Vicbcn2001
closed
1 year ago
3
Gene expression and TF activity
#60
parkjooyoung99
closed
1 year ago
1
Cannot fit a linear model with colinear covariables
#59
roskcl
closed
2 years ago
1
Options to use locally downloaded database
#58
woaidangyang
closed
1 year ago
2
Error in open.connection(con, "rb") Timeout was reached
#57
kaizen89
closed
1 year ago
10
Inconsistent condition values in the decouple function output
#56
vntasis
closed
2 years ago
1
Not a bug or an error, just wondering about the p-values from the inference.
#55
harimchun
closed
2 years ago
2
Vignette build fails due to missing packages
#54
deeenes
closed
2 years ago
2
`tidyverse` in `Suggests` and vignettes
#53
deeenes
closed
2 years ago
1
Run_viper error
#52
Chengwei94
closed
2 years ago
2
Can I still use Findmarkers on dorothea results returned by wmean
#51
Chengwei94
closed
2 years ago
1
problems running get_progeny after conda install
#50
JGASmits
closed
2 years ago
2
adding regularization options to mlm - FZ
#49
fanzheng10
closed
2 years ago
0
Error: Column `condition` not found in `.data`
#48
charlotteboys
closed
2 years ago
2
Duplicated regulons in mlm after filtering
#47
smuellerd
closed
2 years ago
1
ulm, mlm, mdt and udt now accept matrices with one column as input
#46
PauBadiaM
closed
2 years ago
0
Outdated example in README.md
#45
pablormier
closed
2 years ago
1
Development
#44
PauBadiaM
closed
2 years ago
0
Added stats package for BioC check
#43
PauBadiaM
closed
2 years ago
0
Fixed consensus bug
#42
PauBadiaM
closed
2 years ago
0
Development
#41
PauBadiaM
closed
2 years ago
0
Added logo
#40
PauBadiaM
closed
2 years ago
0
Changed speedlm(unstable) to lm(stable)
#39
PauBadiaM
closed
2 years ago
0
Development
#38
PauBadiaM
closed
2 years ago
0
Remove doMC from imports
#37
PauBadiaM
closed
2 years ago
0
Development
#36
PauBadiaM
closed
2 years ago
0
Manuscript link broken
#35
Skourtis
closed
2 years ago
1
Development
#34
PauBadiaM
closed
2 years ago
0
Fixed bugs for check
#33
PauBadiaM
closed
2 years ago
0
Devel pau
#32
PauBadiaM
closed
2 years ago
0
Error: Column `likelihood` not found in `.data`
#31
linanzhang
closed
3 years ago
1
Merve devel into master
#30
jvelezmagic
closed
3 years ago
0
scira same results as original repo
#29
jvelezmagic
closed
3 years ago
0
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