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saezlab
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liana-py
LIANA+: an all-in-one framework for cell-cell communication
http://liana-py.readthedocs.io/
GNU General Public License v3.0
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why the output dont include the cellchat part?
#145
LJZYaaa
opened
1 week ago
3
Large number of pvals are `0` without specificity
#144
and-rewsmith
opened
1 week ago
4
li.mt.bivariate: No common columns to perform merge on
#143
rcannood
opened
1 week ago
1
AttributeError: module 'corneto.methods.carnival' has no attribute '_extended_carnival_problem'
#142
gianfilippo
closed
1 week ago
7
Option to aggregate individual MistyData objects from multiple samples
#141
whitneyt1
opened
2 weeks ago
4
pin `anndata` to `<=0.10.8` due to scverse/mudata#77
#140
deeenes
closed
1 week ago
2
circle_plot function for visualizing cell-cell communication
#139
WeipengMO
opened
3 weeks ago
3
1.4.0
#138
dbdimitrov
closed
4 weeks ago
0
get_hcop_orthologs
#137
tuhulab
opened
1 month ago
1
Using data loader for performing tensor Factorization
#136
Mona1982
opened
1 month ago
9
CellChat AttributeError: 'SparseCSRView' object has no attribute 'A'
#135
AmyOlex
opened
1 month ago
2
Support for Calligraphy ?
#134
divyanshusrivastava
opened
1 month ago
1
Guidelines to choose the best parameters for bivariate analysis using Visium HD data
#133
Rafael-Silva-Oliveira
opened
1 month ago
5
CCI network map for global LR interactions between cell types
#132
Rafael-Silva-Oliveira
closed
1 month ago
5
Does LIANA+ support Visium HD data?
#131
Rafael-Silva-Oliveira
closed
1 month ago
36
fail in running https://liana-py.readthedocs.io/en/latest/notebooks/misty.html
#130
huiyijiangling
opened
1 month ago
1
Plot SVGs are massive in size due to color legend
#129
dnjst
opened
2 months ago
2
Batch aware filtering of interactions in lrs_to_views
#128
robinfallegger
closed
1 day ago
4
Saving Misty model as .pkl
#127
Zach-Sten
opened
2 months ago
3
Questions about LIANA+ requirement for cell number
#126
jun-miao113
opened
2 months ago
3
v1.3.0
#125
dbdimitrov
closed
2 months ago
0
Metabolite-protein interaction analysis did not show results
#124
jun-miao113
closed
2 months ago
5
Spatially informed bivariate metrics in tensor cell2cell and MOFA
#123
Zach-Sten
opened
3 months ago
3
Issue with orthologue conversion
#122
chrika2
closed
3 months ago
2
Make sure that bivariate throws an exception when nz_prop leads to no genes being considered
#121
dbdimitrov
closed
2 months ago
0
pandas name index [BUG]
#120
dbdimitrov
closed
2 months ago
0
v1.2.1
#119
dbdimitrov
closed
3 months ago
0
Clarifications Differential analysis vignette
#118
maximelepetit
opened
3 months ago
1
Bug on Differential Expression Analysis for CCC & Downstream Signalling Networks Vignette
#117
maximelepetit
closed
2 months ago
3
Import Error: Cannot Import name RandomForestModel
#116
poloarol
closed
3 months ago
3
GeneA_GeneB gene expression level error
#115
alecdavi
opened
3 months ago
2
set required Python to `>=3.8`: the `<3.12` causes a broad incompatibility issue in package management
#114
deeenes
closed
3 months ago
1
Volcano plots for differentially expressed signaling pairs
#113
Zach-Sten
opened
4 months ago
2
Improve spatial neighbours function
#112
dbdimitrov
closed
3 months ago
0
Proper Caching for MetalinksDB & HCOP
#111
dbdimitrov
opened
4 months ago
2
1.2.0
#110
dbdimitrov
closed
4 months ago
0
KeyError: None when using top_n parameter in li.pl.dotplot
#109
WeipengMO
closed
4 months ago
2
Update _tileplot.py for plotnine >=0.13
#108
redst4r
closed
4 months ago
1
LR_means, meaning?
#107
soniyalama
closed
2 months ago
2
bandwith in multiple samples
#106
SopjudeS
closed
4 months ago
4
Please check if appropriate organism/ID type was provided! Allowed proportion (0.98) of missing resource elements exceeded (1.00).
#105
soniyalama
closed
4 months ago
10
Sanity check if liana uses the log normalised values
#104
ahmetrifaioglu
opened
5 months ago
1
AnnData dtype argument deprecation
#103
dbdimitrov
opened
5 months ago
0
Clarify LIANA + MOFA vignette
#102
dbdimitrov
closed
4 months ago
2
MOFA talk with multiple samples
#101
nicolebussola
closed
3 months ago
1
Add a tutorial on GPU-accelerated misty
#100
dbdimitrov
opened
5 months ago
0
Export Elbow plot from nmf
#99
dbdimitrov
opened
5 months ago
0
v1.1.0
#98
dbdimitrov
closed
5 months ago
0
ValueError: Please check if appropriate organism/ID type was provided!
#97
anke-king
closed
3 months ago
6
Liana on pseduo bulk-sc data data
#96
Marwansha
closed
2 months ago
6
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