saketkc gencode_regions issues - Githubissues

saketkc / gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

BSD 2-Clause "Simplified" License

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issues

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gencode 30 and ensembl 97 gtf/gff3 not working

#13 zyh4482 closed 2 years ago
2
Promoters?

#12 c2b2pss closed 2 years ago
1
Gsoc2021 gtfbase

#11 tanishq67 opened 3 years ago
0
the position of first intron

#10 sixone11 opened 3 years ago
1
tested pyensembl to download gtf file of dog to generate bed files

#9 anamika-yadav99 opened 3 years ago
1
Bed file for Felis_Catus9.0

#8 anamika-yadav99 closed 3 years ago
1
Updated README.md

#7 tanishq67 closed 3 years ago
1
Issues faced while trying to run notebooks

#6 tanishq67 closed 3 years ago
2
can not execute gtfToGenePred

#5 qicaibiology closed 4 years ago
15
Avoid using scientific notation

#4 bug1303 closed 4 years ago
1
In your R script (create_regions_from_gencode.R) there is a small bug

#3 Alex-Nesta opened 5 years ago
5
Not working with gencode.mm10.vM14.annotation.gtf / gff3

#2 AMChalkie closed 7 years ago
1
extra information on the regions

#1 asifzubair closed 7 years ago
4