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sanger-bentley-group
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GBS-Typer-sanger-nf
GBS Typer Pipeline in Nextflow
GNU General Public License v3.0
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Improve stability and compatibility
#95
HarryHung
closed
4 weeks ago
1
Move serotype database to local
#94
HarryHung
closed
4 weeks ago
1
Run getmlst.py once and cache the result per pipeline run
#93
HarryHung
closed
1 month ago
1
Workaround for srst2 mkfifo failure when using latest Nextflow and Singularity
#92
HarryHung
closed
1 month ago
1
Advice for HPC with slurm
#91
Tetrajf
closed
4 weeks ago
1
Dev
#90
blue-moon22
closed
1 year ago
0
Ignore error
#89
blue-moon22
closed
1 year ago
1
Dev
#88
blue-moon22
closed
1 year ago
0
Fix/serotyping
#87
blue-moon22
closed
1 year ago
1
Fix/readme
#86
blue-moon22
closed
1 year ago
1
Dev
#85
blue-moon22
closed
1 year ago
0
Fix/move output
#84
blue-moon22
closed
1 year ago
0
update
#83
blue-moon22
closed
1 year ago
0
Dev
#82
blue-moon22
closed
1 year ago
0
Fix readme
#81
blue-moon22
closed
1 year ago
1
Maybe the Nextflow problem
#80
sam-mic
closed
4 weeks ago
1
Dev
#79
blue-moon22
closed
1 year ago
1
Fix/serores
#78
blue-moon22
closed
1 year ago
1
Dev
#77
blue-moon22
closed
2 years ago
1
Remove clean up
#76
blue-moon22
closed
2 years ago
0
problems with running PBPtyper
#75
gaworj
closed
4 weeks ago
8
Dev
#74
blue-moon22
closed
2 years ago
0
Fix/remove files
#73
blue-moon22
closed
2 years ago
1
Fix NT values
#72
blue-moon22
closed
2 years ago
0
Fix/cps type
#71
blue-moon22
closed
2 years ago
0
Change version column name
#70
blue-moon22
closed
2 years ago
1
Change version column name
#69
blue-moon22
closed
2 years ago
0
Dev
#68
blue-moon22
closed
2 years ago
0
Dev
#67
blue-moon22
closed
2 years ago
1
Feature/version
#66
blue-moon22
closed
2 years ago
1
Dev
#65
blue-moon22
closed
2 years ago
1
Fix/restructure
#64
blue-moon22
closed
2 years ago
1
Adding GBS QC pipeline
#63
blue-moon22
opened
2 years ago
0
Create resfinder accessions output
#62
blue-moon22
closed
2 years ago
1
Add a version column to final report
#61
blue-moon22
closed
2 years ago
1
Add aadE, tetW, reorder columns
#60
blue-moon22
closed
2 years ago
1
Add 70 and 73 offset to gyrA and parC SNPs
#59
blue-moon22
closed
2 years ago
0
Delete columns in final report and change names, include * as common variant
#58
blue-moon22
closed
2 years ago
1
Fix/change serotype iii
#57
blue-moon22
closed
2 years ago
0
Add lsa(e) gene
#56
blue-moon22
closed
2 years ago
0
Change word variant to SNP in results
#55
blue-moon22
closed
2 years ago
0
Revert removing resfinder genes
#54
blue-moon22
closed
2 years ago
0
Replace * with space
#53
blue-moon22
closed
2 years ago
0
Remove non-GBS tet ARGs
#52
blue-moon22
closed
2 years ago
0
0.0.7
#51
blue-moon22
closed
2 years ago
0
Fix bug with mlst alleles fasta
#50
blue-moon22
closed
2 years ago
0
Re-arrange a few columns
#49
blue-moon22
closed
3 years ago
0
Replace and add more resistance genes
#48
blue-moon22
closed
3 years ago
0
Add more resistance genes to restyper
#47
blue-moon22
closed
3 years ago
1
Include failed samples and workflows in output
#46
blue-moon22
closed
3 years ago
1
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