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sanger-bentley-group
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GBS-Typer-sanger-nf
GBS Typer Pipeline in Nextflow
GNU General Public License v3.0
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Change mlst columns from int64 to string obj
#45
blue-moon22
closed
3 years ago
0
V0.0.10
#44
blue-moon22
closed
3 years ago
0
Report out fix
#43
blue-moon22
closed
3 years ago
1
V0.0.9
#42
blue-moon22
closed
3 years ago
0
Combine output
#41
blue-moon22
closed
3 years ago
0
Fix res output
#40
blue-moon22
closed
3 years ago
0
Fix typo in regression test
#39
blue-moon22
closed
3 years ago
0
Feature/existing mlsts
#38
blue-moon22
closed
3 years ago
0
PBP typer and res typer fixes
#37
blue-moon22
closed
3 years ago
0
Replicability issue in regression test
#36
blue-moon22
closed
3 years ago
0
Dockerfile update
#35
kpepper
closed
3 years ago
0
Pbp typer
#34
blue-moon22
closed
3 years ago
1
Removed backup folder
#33
kpepper
closed
3 years ago
0
Pulled out some common file handling methods
#32
kpepper
closed
3 years ago
0
Various updates
#31
kpepper
closed
3 years ago
0
Surface typing pipeline
#30
kpepper
closed
3 years ago
1
Pipeline checks
#29
blue-moon22
closed
3 years ago
0
New MLST pipeline
#28
blue-moon22
closed
3 years ago
0
Added an LSF configuration
#27
kpepper
closed
3 years ago
1
New databases
#26
blue-moon22
closed
3 years ago
0
update readme
#25
blue-moon22
closed
3 years ago
0
include genes in drug category file again
#24
blue-moon22
closed
3 years ago
0
Regression tests
#23
blue-moon22
closed
3 years ago
0
add results directory to drug_cat_alleles output
#22
blue-moon22
closed
3 years ago
0
fix copying reference db to tmp folder
#21
blue-moon22
closed
3 years ago
0
Modify drug cat alleles
#20
blue-moon22
closed
3 years ago
0
Results
#19
blue-moon22
closed
3 years ago
0
Change res target names
#18
blue-moon22
closed
3 years ago
0
Flexi restyper
#17
blue-moon22
closed
3 years ago
2
New arguments
#16
blue-moon22
closed
3 years ago
0
Add current farm5 instructions
#15
blue-moon22
closed
3 years ago
0
add more detailed running of pipeline and outputs, update installatio…
#14
blue-moon22
closed
3 years ago
0
Added basic manifest
#13
kpepper
closed
3 years ago
0
fix bug with changing dictionary length and writing output file with …
#12
blue-moon22
closed
3 years ago
0
Fixed commit for nextflow config file update
#11
kpepper
closed
3 years ago
0
Sero res output
#10
blue-moon22
closed
3 years ago
0
Fixed bug
#9
kpepper
closed
3 years ago
0
Sero res output
#8
blue-moon22
closed
3 years ago
0
Add CI and release script
#7
kpepper
closed
3 years ago
2
Sero patch
#6
blue-moon22
closed
3 years ago
0
replace perl script with python process_serotyper_results.py and upda…
#5
blue-moon22
closed
4 years ago
0
GBS res typer updates
#4
kpepper
closed
4 years ago
0
Docker related changes
#3
kpepper
closed
4 years ago
0
Basic nf pipeline
#2
blue-moon22
closed
4 years ago
0
Added first draft docker file
#1
kpepper
closed
4 years ago
0
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