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sanjaynagi
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AnoPrimer
Primer Design in Anopheles gambiae and funestus considering genetic variation
https://sanjaynagi.github.io/AnoPrimer/
MIT License
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move plot_primer_locs() before primer_snp_frequencies() in evaluate_primers()
#62
sanjaynagi
opened
1 week ago
0
Improve primer params options, funestus bugfix from v2.0.5
#61
sanjaynagi
closed
1 week ago
0
fix probe targeting
#60
sanjaynagi
closed
1 week ago
0
dashed lines for probes and exon junctions in `plot_primer_locs()`, and allow primer3-py =>2.0.0
#59
sanjaynagi
closed
3 weeks ago
0
update documentation after refactor
#58
sanjaynagi
closed
3 weeks ago
0
allow later versions of primer3-py
#57
sanjaynagi
closed
3 weeks ago
0
Show exon exon junction clearly in plot
#56
sanjaynagi
closed
3 weeks ago
0
Add primer spans to dataframe and round floats
#55
sanjaynagi
closed
3 weeks ago
0
Fixes for one based pairs
#54
sanjaynagi
closed
3 weeks ago
0
one based numbering of primer pairs
#53
sanjaynagi
closed
3 weeks ago
0
Fix legend in `plot_primer_locs()`
#52
sanjaynagi
closed
3 weeks ago
0
fix legend in plot_primer_locs()
#51
sanjaynagi
closed
3 weeks ago
0
start primer pair numbering from 1, not 0
#50
sanjaynagi
closed
3 weeks ago
1
fix CI - google author malariagen_data authentication
#49
sanjaynagi
opened
3 weeks ago
0
Remove author line from nb intros
#48
sanjaynagi
closed
3 weeks ago
0
refactor AnoPrimer
#47
sanjaynagi
closed
3 weeks ago
1
refactor and create results class with methods
#46
sanjaynagi
closed
3 weeks ago
3
add primer3 options from multiply
#45
sanjaynagi
closed
1 week ago
0
move ag3/af1 to after species selection
#44
sanjaynagi
closed
5 months ago
0
Change package name to AnoPrimer
#43
sanjaynagi
closed
8 months ago
0
round afs in plot_snp_frequencies()
#42
sanjaynagi
closed
1 year ago
0
check my oligo and add tests
#41
sanjaynagi
closed
1 year ago
0
fix for numexpr bug - replace pd.query() '@' usage with f-strings
#40
sanjaynagi
closed
1 year ago
0
Forbidden control characters in expression in Workshop 6's module 4
#39
jonbrenas
closed
1 year ago
4
make a faq on the documentation
#38
sanjaynagi
opened
1 year ago
0
fix bug in designPrimers()
#37
sanjaynagi
closed
1 year ago
0
docs
#36
sanjaynagi
closed
1 year ago
0
add contig to span
#35
sanjaynagi
closed
1 year ago
0
add genomic span
#34
sanjaynagi
closed
1 year ago
0
add genomic primer span to primer df
#33
sanjaynagi
closed
1 year ago
0
Support for and pin primer3-py v2.0.0
#32
sanjaynagi
closed
1 year ago
0
Add support for primer3-py 2.0.0
#31
sanjaynagi
closed
1 year ago
0
Upgrade Python dependency
#30
alimanfoo
closed
1 year ago
3
Cannot install on Python 3.10
#29
alimanfoo
closed
1 year ago
3
add docstrings to all public functions, make jupyter book
#28
sanjaynagi
closed
1 year ago
0
af1 support
#27
sanjaynagi
closed
1 year ago
1
add funestus support
#26
sanjaynagi
closed
1 year ago
0
exon-exon option and docstring
#25
sanjaynagi
closed
1 year ago
1
make exon-exon junctions for cDNA optional
#24
sanjaynagi
closed
1 year ago
0
feedback when primer design fails, designPrimers()
#23
sanjaynagi
closed
1 year ago
0
remove contig argument, use region string. prepare_sequence() function
#22
sanjaynagi
closed
1 year ago
1
Change target argument to region string
#21
sanjaynagi
closed
1 year ago
0
in long notebook move ag1000g cohort choice in colab form at beginning
#20
sanjaynagi
closed
3 weeks ago
2
changing use of qPCR to cDNA
#19
sanjaynagi
closed
2 years ago
1
allow the design of cDNA primers + probe
#18
sanjaynagi
opened
2 years ago
0
rename qPCR to cDNA
#17
sanjaynagi
closed
2 years ago
0
A scoring function for oligo binding
#16
sanjaynagi
closed
1 year ago
1
rename notebooks
#15
sanjaynagi
closed
2 years ago
0
change save parameter to out_dir
#14
sanjaynagi
closed
2 years ago
1
allow user to configure paths to save outputs to
#13
sanjaynagi
closed
2 years ago
0
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