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sansomlab
/
cellhub
Python pipelines for large-scale multimodal single-cell data analysis on HPC clusters
MIT License
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sns_filter_cells
#60
cosrosea
opened
5 months ago
0
Update install.packages.R
#59
TBar123
closed
5 months ago
0
Update installation.rst
#58
TBar123
closed
5 months ago
0
Fp tcr
#57
oxfp
closed
8 months ago
0
Integrate reference pipeline and update Souporcell pipeline to align with the new cellhub
#56
cosrosea
closed
9 months ago
0
Bug fix for fetch_cells function to include ADT information.
#55
cosrosea
closed
9 months ago
0
fix ADT stat in pipeline_fetch_cells.py
#54
snsansom
closed
10 months ago
0
calculate qc metrics only on gex_UMI, not total_UMI
#53
xi-o
closed
9 months ago
0
add reference pipeline for cellranger reference building
#52
cosrosea
closed
10 months ago
0
install error fa2
#51
schyen
opened
1 year ago
0
install error sklearn
#50
schyen
opened
1 year ago
1
bug fixing r1-length and r2-length parameters in .yml and pipeline code
#49
nickilott
closed
1 year ago
2
pipeline_cellranger.py r1len and r2len parameters being interpreted as False rather than "false"
#48
nickilott
closed
1 year ago
2
bug fix when outputting merged TCR and BCR annotations - spaces were …
#47
nickilott
closed
1 year ago
1
Sns fix hashing
#46
snsansom
closed
1 year ago
0
Sns add cellranger count
#45
snsansom
closed
1 year ago
0
escape latex in summary table
#44
snsansom
closed
1 year ago
0
YZ adt
#43
xi-o
closed
1 year ago
0
YZ_general
#42
xi-o
closed
1 year ago
1
s/tenxutils/cellhub in cluster_plot_marker_numbers.R
#41
snsansom
closed
1 year ago
0
Sns fix cellranger multi config
#40
snsansom
closed
1 year ago
0
Update ifnb.rst
#39
xi-o
closed
1 year ago
0
add souporcell pipeline
#38
cosrosea
closed
1 year ago
0
standardise pipeline doc names
#37
snsansom
closed
2 years ago
0
fix typos
#36
snsansom
closed
2 years ago
0
refactor docs
#35
snsansom
closed
2 years ago
0
rtd
#34
snsansom
closed
2 years ago
0
fix readthedocs yaml
#33
snsansom
closed
2 years ago
0
refactor docs for readthedocs
#32
snsansom
closed
2 years ago
0
Sns clean up cellhub.tasks
#31
snsansom
closed
2 years ago
0
add ADT normalisation to workflow figure
#30
snsansom
closed
2 years ago
0
update workflow image
#29
snsansom
closed
2 years ago
0
Sns api revision
#28
snsansom
closed
2 years ago
0
Add pipeline cellbender
#27
snsansom
closed
2 years ago
0
Reduce memory usage of pipeline_cluster.py
#26
snsansom
closed
2 years ago
0
Sns add pipeline cluster
#25
snsansom
closed
2 years ago
0
Sns fix cellranger jobmode
#24
snsansom
closed
2 years ago
1
Clean-ambient
#23
Bionett
closed
2 years ago
2
fix jobmode cellranger
#22
davisimone
closed
2 years ago
0
ADT normalization & docs
#21
Bionett
closed
2 years ago
1
ADT normalization
#20
Bionett
closed
2 years ago
0
Sns add demux em
#19
snsansom
closed
3 years ago
0
pipeline_cell_qc needs scrublet investigate
#18
ladakoneva
closed
3 years ago
1
needs troubleshooting for fetch_ADT in cp_adt_dbs
#17
ladakoneva
opened
3 years ago
0
ADT semi-automated DSB normalization
#16
Bionett
closed
2 years ago
1
Sns incorporate dehash results into celldb
#15
snsansom
closed
3 years ago
0
Add pipeline_dehash.py
#14
snsansom
closed
3 years ago
0
Sns fixes for adt and vdj
#13
snsansom
closed
3 years ago
0
Sns api v1
#12
snsansom
closed
3 years ago
0
Fix yml file selection
#11
snsansom
closed
3 years ago
0
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