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scanpy-tutorials
Scanpy Tutorials.
https://scanpy-tutorials.readthedocs.io/
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Marsilea tutorial
#98
ivirshup
closed
7 months ago
1
An example notebook for plotting with marsilea
#97
Mr-Milk
closed
7 months ago
12
Dask updates
#96
ivirshup
closed
8 months ago
1
More dask updates
#95
ivirshup
closed
8 months ago
1
[pre-commit.ci] pre-commit autoupdate
#94
pre-commit-ci[bot]
closed
8 months ago
0
Scale data in Visium tutorial? #question
#93
Jieran-S
closed
5 months ago
1
(feat): dask tutorial
#92
ilan-gold
closed
8 months ago
6
shorten knn
#91
ivirshup
closed
8 months ago
2
Use sklearn-ann in "alternative knn libraries" tutorial?
#90
ivirshup
closed
8 months ago
2
[pre-commit.ci] pre-commit autoupdate
#89
pre-commit-ci[bot]
closed
8 months ago
0
Submodule
#88
ivirshup
closed
8 months ago
11
Add neighbors transformer tutorial
#87
flying-sheep
closed
8 months ago
1
Switch to myst-nb
#86
flying-sheep
closed
8 months ago
2
pbmc scanpy tutorial reproducibility error in sc.tl.leiden arguments
#85
Lor-96
closed
8 months ago
2
The dataset of the scanpy workshop day2
#84
cxy-peter
opened
9 months ago
0
(fix): use correct leiden implementation
#83
ilan-gold
closed
9 months ago
1
(bug): `pbmc3k` tutorial is not reproducible
#82
ilan-gold
opened
10 months ago
0
(fix): make `basic-analysis` runnable
#81
ilan-gold
closed
10 months ago
1
(fix): scanorama notebook
#80
ilan-gold
closed
10 months ago
2
Automate tutorial building in CI
#79
flying-sheep
opened
10 months ago
3
Fix local build
#78
flying-sheep
closed
10 months ago
0
(feat): Update notebooks for new leiden defaults
#77
ilan-gold
closed
9 months ago
13
ImportError: Please install the leiden algorithm: `conda install -c conda-forge leidenalg` or `pip3 install leidenalg`.
#76
Aspirinnnn
closed
1 year ago
1
switch to book theme
#75
flying-sheep
closed
1 year ago
1
Cannot reproduce trajectory inference tutorial
#74
OXPHOS
opened
1 year ago
0
Add advanced plotting tutorial to index
#73
grst
closed
1 year ago
0
3k PBMCs tutorial: neighborhood graph scanpy vs. Seurat
#72
p-lombard
closed
1 year ago
2
fix typo
#71
partrita
closed
1 year ago
3
Fix RTD config
#70
flying-sheep
closed
1 year ago
0
Bot to update submodule on main repo when PRs are merged
#69
adamgayoso
closed
1 year ago
1
Switch to myst admonitions
#68
flying-sheep
closed
1 year ago
1
Use myst-nb admonitions
#67
adamgayoso
closed
1 year ago
1
Wrong link? I could not connect the link to download pre-processed h5ad file.
#66
id-f
opened
1 year ago
0
pbmc3k - KeyError: 'base'
#65
shachafl
closed
1 year ago
1
Finalize linking strategy (where to host, where to link)
#64
adamgayoso
closed
1 year ago
6
pearson residue normalization project to tSNE coordinates vs UMAP and the surface outline property?
#63
brainfo
opened
1 year ago
0
Further improvements for the advanced visualisation tutorial
#62
Hrovatin
opened
1 year ago
3
advanced plotting
#61
Hrovatin
closed
1 year ago
9
I want to translate the document out of Chinese version
#60
zEpoch
opened
1 year ago
2
Fixing references to modules
#59
mys721tx
closed
2 years ago
2
remove unused tutorials
#58
adamgayoso
closed
1 year ago
4
tutorial_pearson_residuals: why are residuals computed twice?
#57
alexlenail
closed
1 year ago
1
Add a note to the old tutorials
#56
dineshpalli
closed
1 year ago
1
pbmc3k tutorial issue
#55
juliaryann
closed
2 years ago
0
how can I know what marker genes the adata contains directly ?
#54
yingyuan830
closed
2 years ago
0
ipynb that can be run as a single pipeline from start to finish
#53
sylestiel
closed
2 years ago
1
Workshop updates
#52
ivirshup
closed
2 years ago
1
Extract Differentialy Expressed Genes for each group
#51
ViriatoII
closed
2 years ago
2
add scanpy workshop notebooks
#50
mbuttner
closed
9 months ago
4
Update scanorama usage
#49
ivirshup
closed
2 years ago
1
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