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spatialdata
An open and interoperable data framework for spatial omics data
https://spatialdata.scverse.org/
BSD 3-Clause "New" or "Revised" License
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Parse and validate against `POLYGON Z` (same for points and multipolygons) in the `ShapesModel`
#505
LucaMarconato
opened
1 month ago
0
Check for uniqueness of names also across the file storage
#504
LucaMarconato
opened
1 month ago
0
Proposal: simplify data model for Points
#503
LucaMarconato
opened
1 month ago
1
spatialdata-plot documentation hyperlink
#502
Artur-man
closed
1 month ago
1
reimplemented incremental io
#501
LucaMarconato
opened
1 month ago
11
`get_extent()` does not recognizes `SpatialData` in the single dispatch pattern in specific cases
#500
LucaMarconato
closed
1 month ago
1
Custom spatialdata.models.ShapesModel throws "tuple index out of range"
#499
Artur-man
closed
1 month ago
2
automatic backing of sdata.tables
#498
ArneDefauw
opened
1 month ago
2
fixes in get_centroids, spatial_query for multiscale raster, dataloader
#497
LucaMarconato
closed
1 month ago
1
Re-enable modular io for elements and transformation
#496
LucaMarconato
opened
1 month ago
1
Fixes in get_centroids, spatial_query for multiscale raster, dataloader
#495
LucaMarconato
closed
1 month ago
0
`join_sdata_spatialelement_table()` fails with non-unique `AnnData` obs
#494
LucaMarconato
opened
1 month ago
0
Warning for Polygon with z dimension
#493
LucaMarconato
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#492
pre-commit-ci[bot]
closed
1 month ago
1
Update design_doc.md
#491
LucaMarconato
closed
1 month ago
1
use iloc
#490
melonora
closed
1 month ago
1
fix str column showing object dtype
#489
melonora
closed
2 months ago
1
Opening remote data store is inconsistent
#488
berombau
opened
2 months ago
0
Potential compatibility issue with Dask 2024.3.0
#487
csangara
closed
2 months ago
1
Columns order for points element shuffled sometimes after parser/deepcopy
#486
LucaMarconato
opened
2 months ago
0
Test joins with string indices and instance id
#485
melonora
closed
2 months ago
1
Missing key spatialdata_attrs in shapes metadata
#484
GuoshengMa
closed
1 month ago
4
Replace some `AssertionError` with other exceptions
#483
LucaMarconato
opened
2 months ago
0
Adjust for dask expressions update
#482
melonora
opened
2 months ago
1
fix dask dataframe dependency
#481
LucaMarconato
closed
2 months ago
2
deedcopy() utils function
#480
LucaMarconato
closed
2 months ago
1
rechunking raster data after spatial query
#479
LucaMarconato
closed
2 months ago
1
Rechunking error when saving a queried raster element
#478
LucaMarconato
opened
2 months ago
0
Improve docs
#477
LucaMarconato
closed
1 month ago
7
Removed int contraint for instance_key column
#476
LucaMarconato
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#475
pre-commit-ci[bot]
closed
2 months ago
1
polygon_query: we expect at least one shape
#474
EST09
closed
2 months ago
3
Operation `to_circles()`
#473
LucaMarconato
closed
2 months ago
3
Fixed and tested index bug points model
#471
LucaMarconato
closed
2 months ago
1
`PointsModel.parse()` resets the index when passing a dataframe
#470
LucaMarconato
closed
2 months ago
0
Adding New Shapes Layer Raises Terse Exception
#469
jeffquinn-msk
closed
1 month ago
5
Added `validate_table_annotation_target()`
#468
LucaMarconato
closed
2 months ago
1
`_get_unique_label_values_as_index()` gives the wrong dtype
#467
LucaMarconato
closed
2 months ago
2
allow table to be None in get_values and _locate_values
#466
melonora
closed
2 months ago
6
`get_centroids()`
#465
LucaMarconato
closed
2 months ago
1
Attempting to write segmented image makes object not saveable.
#464
LinearParadox
closed
1 month ago
4
Spatialdata does not seem to be interoperable with squidpy image pipelines
#463
LinearParadox
opened
2 months ago
0
Filter table annotate
#462
melonora
closed
2 months ago
2
[pre-commit.ci] pre-commit autoupdate
#461
pre-commit-ci[bot]
closed
2 months ago
1
Update locate values
#460
melonora
closed
2 months ago
1
add possibility for custom table name
#459
melonora
closed
2 months ago
2
SpatialData lacks Observation Window Metadata
#458
MobiTobi
opened
2 months ago
6
Tolerance when reading corrupted data
#457
LucaMarconato
opened
3 months ago
1
Reduce import time
#456
aeisenbarth
opened
3 months ago
1
multi table support
#455
LucaMarconato
closed
2 months ago
3
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